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   LOCUS       NC_009840            1738790 bp    DNA     circular BCT 21-SEP-2007
   DEFINITION  Prochlorococcus marinus str. MIT 9215, complete genome.
   ACCESSION   NC_009840
   VERSION     NC_009840.1  GI:157412338
   KEYWORDS    .
   SOURCE      Prochlorococcus marinus str. MIT 9215
     ORGANISM  Prochlorococcus marinus str. MIT 9215
               Bacteria; Cyanobacteria; Prochlorales; Prochlorococcaceae;
               Prochlorococcus.
   REFERENCE   1  (bases 1 to 1738790)
     AUTHORS   Kettler,G., Martiny,A.C., Huang,K., Zucker,J., Coleman,M.L.,
               Rodrigue,S., Chen,F., Lapidus,A., Ferriera,S., Johnson,J.,
               Steglich,C., Church,G., Richardson,P. and Chisholm,S.W.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Patterns and Implications of Gene Gain and Loss in the Evolution of
               Prochlorococcus
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1738790)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1738790)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Goltsman,E., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Chisholm,S.W. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (07-SEP-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000825.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001067
               Source DNA and bacteria available from Sallie W. Chisholm
               (chisholm@mit.edu)
               Contacts: Sallie W. Chisholm (chisholm@mit.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[]

Начало Конец Направление Длина PID Ген COG Комментарий
63665 63915 - 251 157412338 P9215_tmRNAVIMSS3212878 - tmRNA, 10Sa RNA, SsrA
72797 72878 - 82 157412338 P9215_tRNALeuVIMSS1723373 - 15 Leu tRNA
130026 130097 + 72 157412338 P9215_tRNAAsnVIMSS1723390 - 07 Asn tRNA
236411 236492 + 82 157412338 P9215_tRNALeuVIMSS1723391 - 15 Leu tRNA
256261 256334 - 74 157412338 P9215_tRNAArgVIMSS1723372 - 11 Arg tRNA
271390 271462 - 73 157412338 P9215_tRNAMetVIMSS1723371 - 16 Met tRNA
303246 303321 - 76 157412338 P9215_tRNAPheVIMSS1723370 - 17 Phe tRNA
319913 321377 + 1465 157412338 P9215_rrsVIMSS1723409 - 16S ribosomal RNA
321502 321575 + 74 157412338 P9215_tRNAIleVIMSS1723392 - 14 Ile tRNA
321588 321660 + 73 157412338 P9215_tRNAAlaVIMSS1723393 - 02 Ala tRNA
321917 324790 + 2874 157412338 P9215_rrlVIMSS1723408 - 23S ribosomal RNA
324857 324972 + 116 157412338 P9215_rrfVIMSS1723410 - 5S ribosomal RNA
370617 370688 - 72 157412338 P9215_tRNAThrVIMSS1723368 - 12 Thr tRNA
375406 375476 - 71 157412338 P9215_tRNAThrVIMSS1723367 - 12 Thr tRNA
407094 407165 - 72 157412338 P9215_tRNAThrVIMSS1723366 - 12 Thr tRNA
407176 407257 - 82 157412338 P9215_tRNATyrVIMSS1723365 - 18 Tyr tRNA
487224 487297 - 74 157412338 P9215_tRNAAspVIMSS1723364 - 06 Asp tRNA
487678 487750 - 73 157412338 P9215_tRNATrpVIMSS1723363 - 20 Trp tRNA
575553 575638 + 86 157412338 P9215_tRNALeuVIMSS1723394 - 15 Leu tRNA
661866 661952 - 87 157412338 P9215_tRNASerVIMSS1723362 - 08 Ser tRNA
808659 808732 - 74 157412338 P9215_tRNAProVIMSS1723361 - 03 Pro tRNA
861629 861715 + 87 157412338 P9215_tRNASerVIMSS1723395 - 08 Ser tRNA
902395 902468 + 74 157412338 P9215_tRNAMetVIMSS1723396 - 16 Met tRNA
1029617 1029689 - 73 157412338 P9215_tRNAGluVIMSS1723360 - 04 Glu tRNA
1073305 1073376 + 72 157412338 P9215_tRNALysVIMSS1723397 - 10 Lys tRNA
1169648 1169732 - 85 157412338 P9215_tRNASerVIMSS1723381 - 08 Ser tRNA
1199257 1199330 + 74 157412338 P9215_tRNAArgVIMSS1723382 - 11 Arg tRNA
1270351 1270433 - 83 157412338 P9215_pseudotRNAVIMSS1723380 - Xaa tRNA
1283535 1283607 - 73 157412338 P9215_tRNAAlaVIMSS1723379 - 02 Ala tRNA
1323936 1324017 + 82 157412338 P9215_tRNALeuVIMSS1723383 - 15 Leu tRNA
1329195 1329267 + 73 157412338 P9215_tRNAHisVIMSS1723384 - 09 His tRNA
1334273 1334353 - 81 157412338 P9215_ffsVIMSS1723412 - ffs 4.5S RNA component of the signal recognition particle (SRP)
1345545 1345615 - 71 157412338 P9215_tRNAGlyVIMSS1723378 - 01 Gly tRNA
1377317 1377388 + 72 157412338 P9215_tRNAValVIMSS1723385 - 13 Val tRNA
1513533 1513604 + 72 157412338 P9215_tRNAThrVIMSS1723386 - 12 Thr tRNA
1550976 1551064 - 89 157412338 P9215_tRNASerVIMSS1723377 - 08 Ser tRNA
1570878 1570949 + 72 157412338 P9215_tRNAGlnVIMSS1723387 - 05 Gln tRNA
1583582 1583655 + 74 157412338 P9215_tRNAArgVIMSS1723388 - 11 Arg tRNA
1598229 1598299 + 71 157412338 P9215_tRNACysVIMSS1723389 - 19 Cys tRNA
1615207 1615280 - 74 157412338 P9215_tRNAArgVIMSS1723376 - 11 Arg tRNA
1615376 1615682 + 307 157412338 P9215_rnpBVIMSS1723411 - rnpB RnpB RNA: catalytic subunit of RNase P
1698190 1698261 - 72 157412338 P9215_tRNAValVIMSS1723374 - 13 Val tRNA
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