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   LOCUS       NC_009793               9294 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Citrobacter koseri ATCC BAA-895 plasmid pCKO3, complete sequence.
   ACCESSION   NC_009793
   VERSION     NC_009793.1  GI:157149300
   KEYWORDS    .
   SOURCE      Citrobacter koseri ATCC BAA-895
     ORGANISM  Citrobacter koseri ATCC BAA-895
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Citrobacter.
   REFERENCE   1  (bases 1 to 9294)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 9294)
     AUTHORS   McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
               Clifton,W.S., Latreille,P., Courtney,L., Pepin,K., Bhonagiri,V.,
               Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
     CONSRTM   The Citrobacter koseri Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000823.
               Citrobacter (diversus) koseri--Citrobacter cells are isolated from
               water, sewage, soils, and food, as well as from the feces of man
               and other animals, where they may be normal inhabitants. They can
               be found in urine, sputum, and other clinical specimens. They can
               sometimes be opportunistic pathogens particularly in
               immunocompromised patients in hospitals or in infants (Pepperell et
               al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
               references therein).
               
               The strain of Citrobacter koseri being sequenced, strain CDC
               4225-83, was isolated in 1983 in Maryland, where it caused neonatal
               meningitis. It was provided by Caroline Mohr and Melissa Campbell
               of CDC. The strain is available from the American Type Culture
               Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
               Centre as SGSC4696. The genome was sequenced to 8X coverage, using
               plasmid and fosmid libraries and was finished to an error rate of
               less than 1 per 10,000 bases. Automated annotation was performed
               and manual annotation will continue in the labs of Michael
               McClelland and Kenneth Sanderson. The National Institute of Allergy
               and Infectious Diseases (NIAID), National Institutes of Health
               (NIH) has funded this project.
               
               Coding sequences below are predicted using GeneMark v3.3 and
               Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
               Glimmer2 were blasted against NCBI's non-redundant (NR) database
               and predictions generated based on protein alignments. RNA genes
               were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
               was finished as follows unless otherwise noted: all regions were
               double stranded, sequenced with an alternate chemistries or covered
               by high quality data (i.e., phred quality >=30); an attempt was
               made to resolve all sequencing problems, such as compressions and
               repeats; all regions were covered by sequence from more than one
               m13 subclone.
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
4902 5004 + 103 157149300 CKO_pCKO3p06147 - RNAI
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