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   LOCUS       NC_009767            5723298 bp    DNA     circular BCT 04-SEP-2007
   DEFINITION  Roseiflexus castenholzii DSM 13941, complete genome.
   ACCESSION   NC_009767
   VERSION     NC_009767.1  GI:156740028
   KEYWORDS    .
   SOURCE      Roseiflexus castenholzii DSM 13941
     ORGANISM  Roseiflexus castenholzii DSM 13941
               Bacteria; Chloroflexi; Chloroflexales; Chloroflexaceae;
               Roseiflexus.
   REFERENCE   1  (bases 1 to 5723298)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D.A., Hanada,S.,
               Tsukatani,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Roseiflexus castenholzii DSM 13941
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5723298)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5723298)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Mikhailova,N., Bryant,D.A., Hanada,S.,
               Tsukatani,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-AUG-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000804.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000375
               Source DNA available from Donald A. Bryant (dab14@psu.edu)
               Bacteria available from DSMZ: DSM 13941
               Contacts: Donald A. Bryant (dab14@psu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
41302 41378 + 77 156740028 Rcas_R0001 - 03 Pro tRNA
75981 76055 + 75 156740028 Rcas_R0002 - 01 Gly tRNA
133844 133920 + 77 156740028 Rcas_R0003 - 04 Glu tRNA
196893 196967 - 75 156740028 Rcas_R0004 - 12 Thr tRNA
258771 258844 - 74 156740028 Rcas_R0005 - 01 Gly tRNA
540627 540702 + 76 156740028 Rcas_R0006 - 11 Arg tRNA
872572 872647 - 76 156740028 Rcas_R0007 - 16 Met tRNA
886184 886278 - 95 156740028 Rcas_R0008 - SRP RNA; RNA component of signal recognition particle
962602 962675 + 74 156740028 Rcas_R0009 - 05 Gln tRNA
1572991 1573075 - 85 156740028 Rcas_R0010 - 15 Leu tRNA
1586291 1586366 - 76 156740028 Rcas_R0011 - 06 Asp tRNA
1586377 1586453 - 77 156740028 Rcas_R0012 - 04 Glu tRNA
1609324 1609399 - 76 156740028 Rcas_R0013 - 17 Phe tRNA
1609442 1609517 - 76 156740028 Rcas_R0014 - 13 Val tRNA
1609519 1609607 - 89 156740028 Rcas_R0015 - 15 Leu tRNA
1757168 1757243 - 76 156740028 Rcas_R0016 - 12 Thr tRNA
1846648 1846722 + 75 156740028 Rcas_R0017 - 07 Asn tRNA
1881873 1882239 - 367 156740028 Rcas_R0018 - tmRNA
1922170 1922245 + 76 156740028 Rcas_R0019 - 11 Arg tRNA
2187193 2187269 + 77 156740028 Rcas_R0020 - 14 Ile tRNA
2187313 2187388 + 76 156740028 Rcas_R0021 - 02 Ala tRNA
2629831 2629916 + 86 156740028 Rcas_R0022 - 15 Leu tRNA
2629938 2630014 + 77 156740028 Rcas_R0023 - 03 Pro tRNA
2784838 2784914 - 77 156740028 Rcas_R0024 - 13 Val tRNA
3224354 3224428 + 75 156740028 Rcas_R0025 - 16 Met tRNA
3492830 3492920 - 91 156740028 Rcas_R0026 - 08 Ser tRNA
3492941 3493032 - 92 156740028 Rcas_R0027 - 08 Ser tRNA
3493071 3493146 - 76 156740028 Rcas_R0028 - 20 Trp tRNA
3496423 3496513 + 91 156740028 Rcas_R0029 - 08 Ser tRNA
3602007 3602081 - 75 156740028 Rcas_R0030 - 10 Lys tRNA
3676935 3677021 + 87 156740028 Rcas_R0031 - 15 Leu tRNA
3677058 3677131 + 74 156740028 Rcas_R0032 - 05 Gln tRNA
3758719 3758795 - 77 156740028 Rcas_R0033 - 11 Arg tRNA
3835323 3835408 - 86 156740028 Rcas_R0034 - 15 Leu tRNA
3856207 3856283 + 77 156740028 Rcas_R0035 - 03 Pro tRNA
3882829 3882903 - 75 156740028 Rcas_R0036 - 16 Met tRNA
3882909 3883024 - 116 156740028 Rcas_R0037 - 5S ribosomal RNA
3883094 3886016 - 2923 156740028 Rcas_R0038 - 23S ribosomal RNA
3886210 3887678 - 1469 156740028 Rcas_R0039 - 16S ribosomal RNA
4059892 4059967 + 76 156740028 Rcas_R0040 - 02 Ala tRNA
4059974 4060049 + 76 156740028 Rcas_R0041 - 02 Ala tRNA
4361874 4361948 - 75 156740028 Rcas_R0042 - 19 Cys tRNA
4620290 4620366 + 77 156740028 Rcas_R0043 - 11 Arg tRNA
4620422 4620511 + 90 156740028 Rcas_R0044 - 08 Ser tRNA
4718817 4718891 + 75 156740028 Rcas_R0045 - 09 His tRNA
4986130 4986205 - 76 156740028 Rcas_R0046 - 10 Lys tRNA
5017289 5017364 + 76 156740028 Rcas_R0047 - 11 Arg tRNA
5059752 5059827 - 76 156740028 Rcas_R0048 - 01 Gly tRNA
5069471 5069547 - 77 156740028 Rcas_R0049 - 13 Val tRNA
5183512 5184980 + 1469 156740028 Rcas_R0050 - 16S ribosomal RNA
5185174 5188096 + 2923 156740028 Rcas_R0051 - 23S ribosomal RNA
5188166 5188281 + 116 156740028 Rcas_R0052 - 5S ribosomal RNA
5188287 5188361 + 75 156740028 Rcas_R0053 - 16 Met tRNA
5232470 5232546 + 77 156740028 Rcas_R0054 - 04 Glu tRNA
5573172 5573247 - 76 156740028 Rcas_R0055 - 12 Thr tRNA
5573324 5573410 - 87 156740028 Rcas_R0056 - 18 Tyr tRNA
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