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   LOCUS       NC_009718            1948941 bp    DNA     circular BCT 05-SEP-2007
   DEFINITION  Fervidobacterium nodosum Rt17-B1, complete genome.
   ACCESSION   NC_009718
   VERSION     NC_009718.1  GI:154248705
   KEYWORDS    .
   SOURCE      Fervidobacterium nodosum Rt17-B1
     ORGANISM  Fervidobacterium nodosum Rt17-B1
               Bacteria; Thermotogae; Thermotogales; Thermotogaceae;
               Fervidobacterium.
   REFERENCE   1  (bases 1 to 1948941)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Fervidobacterium nodosum Rt17-B1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 1948941)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (31-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 1948941)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (16-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000771.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002340
               Source DNA and bacteria available from Kenneth Noll
               (kenneth.noll@uconn.edu)
               Contacts: Kenneth Noll (kenneth.noll@uconn.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
36410 36485 + 76 154248705 Fnod_R0001 - 07 Asn tRNA
38615 38690 + 76 154248705 Fnod_R0002 - 07 Asn tRNA
118612 118687 + 76 154248705 Fnod_R0003 - 01 Gly tRNA
360021 360097 - 77 154248705 Fnod_R0004 - 11 Arg tRNA
400417 400492 + 76 154248705 Fnod_R0005 - 16 Met tRNA
400531 400606 + 76 154248705 Fnod_R0006 - 12 Thr tRNA
400645 400720 + 76 154248705 Fnod_R0007 - 12 Thr tRNA
464706 464783 - 78 154248705 Fnod_R0008 - 06 Asp tRNA
568302 568377 + 76 154248705 Fnod_R0009 - 02 Ala tRNA
723775 723849 + 75 154248705 Fnod_R0010 - 04 Glu tRNA
723873 723947 + 75 154248705 Fnod_R0011 - 11 Arg tRNA
723953 724028 + 76 154248705 Fnod_R0012 - 10 Lys tRNA
737090 737165 - 76 154248705 Fnod_R0013 - 16 Met tRNA
737173 737249 - 77 154248705 Fnod_R0014 - 19 Cys tRNA
799989 800079 - 91 154248705 Fnod_R0015 - 08 Ser tRNA
808486 808601 - 116 154248705 Fnod_R0016 - 5S ribosomal RNA
808629 810537 - 1909 154248705 Fnod_R0017 -
811605 812621 - 1017 154248705 Fnod_R0017 -
812659 812734 - 76 154248705 Fnod_R0018 - 02 Ala tRNA
812740 812816 - 77 154248705 Fnod_R0019 - 14 Ile tRNA
812858 814365 - 1508 154248705 Fnod_R0020 - 16S ribosomal RNA
863991 864078 + 88 154248705 Fnod_R0021 - 08 Ser tRNA
901024 901098 + 75 154248705 Fnod_R0022 - 13 Val tRNA
926644 926719 - 76 154248705 Fnod_R0023 - 20 Trp tRNA
926951 927037 - 87 154248705 Fnod_R0024 - 18 Tyr tRNA
927069 927144 - 76 154248705 Fnod_R0025 - 12 Thr tRNA
935367 935442 + 76 154248705 Fnod_R0026 - 10 Lys tRNA
935452 935541 + 90 154248705 Fnod_R0027 - 15 Leu tRNA
935568 935642 + 75 154248705 Fnod_R0028 - 01 Gly tRNA
935683 935770 + 88 154248705 Fnod_R0029 - 15 Leu tRNA
935845 936205 + 361 154248705 Fnod_R0030 - tmRNA
946700 946776 + 77 154248705 Fnod_R0031 - 12 Thr tRNA
981235 981338 + 104 154248705 Fnod_R0032 - SRP RNA; RNA component of signal recognition particle
981444 981715 - 272 154248705 Fnod_R0033 - RNA component of RNaseP
1049789 1049878 + 90 154248705 Fnod_R0034 - 15 Leu tRNA
1049920 1049996 + 77 154248705 Fnod_R0035 - 16 Met tRNA
1132987 1133063 - 77 154248705 Fnod_R0036 - 11 Arg tRNA
1133095 1133170 - 76 154248705 Fnod_R0037 - 09 His tRNA
1133206 1133282 - 77 154248705 Fnod_R0038 - 11 Arg tRNA
1133310 1133385 - 76 154248705 Fnod_R0039 - 01 Gly tRNA
1133389 1133465 - 77 154248705 Fnod_R0040 - 03 Pro tRNA
1136879 1136954 - 76 154248705 Fnod_R0041 - 17 Phe tRNA
1137015 1137089 - 75 154248705 Fnod_R0042 - 13 Val tRNA
1137124 1137199 - 76 154248705 Fnod_R0043 - 04 Glu tRNA
1201212 1201288 - 77 154248705 Fnod_R0044 - 03 Pro tRNA
1228972 1229046 - 75 154248705 Fnod_R0045 - 05 Gln tRNA
1229097 1229171 - 75 154248705 Fnod_R0046 - 13 Val tRNA
1231370 1231459 + 90 154248705 Fnod_R0047 - 08 Ser tRNA
1280569 1280684 - 116 154248705 Fnod_R0048 - 5S ribosomal RNA
1280727 1283637 - 2911 154248705 Fnod_R0049 - 23S ribosomal RNA
1283675 1283750 - 76 154248705 Fnod_R0050 - 02 Ala tRNA
1283756 1283832 - 77 154248705 Fnod_R0051 - 14 Ile tRNA
1283874 1285381 - 1508 154248705 Fnod_R0052 - 16S ribosomal RNA
1577787 1577860 - 74 154248705 Fnod_R0053 - 05 Gln tRNA
1677953 1678028 - 76 154248705 Fnod_R0054 - 02 Ala tRNA
1685728 1685815 + 88 154248705 Fnod_R0055 - 15 Leu tRNA
1730518 1730607 + 90 154248705 Fnod_R0056 - 08 Ser tRNA
1730682 1730758 + 77 154248705 Fnod_R0057 - 11 Arg tRNA
1887004 1887080 - 77 154248705 Fnod_R0058 - 03 Pro tRNA
1929272 1929356 + 85 154248705 Fnod_R0059 - 15 Leu tRNA
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