LOCUS NC_009718 1948941 bp DNA circular BCT 05-SEP-2007
DEFINITION Fervidobacterium nodosum Rt17-B1, complete genome.
ACCESSION NC_009718
VERSION NC_009718.1 GI:154248705
KEYWORDS .
SOURCE Fervidobacterium nodosum Rt17-B1
ORGANISM Fervidobacterium nodosum Rt17-B1
Bacteria; Thermotogae; Thermotogales; Thermotogaceae;
Fervidobacterium.
REFERENCE 1 (bases 1 to 1948941)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Fervidobacterium nodosum Rt17-B1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 1948941)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (31-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1948941)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Saunders,E., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Mikhailova,N., Nelson,K., Gogarten,J.P., Noll,K. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000771.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4002340
Source DNA and bacteria available from Kenneth Noll
(kenneth.noll@uconn.edu)
Contacts: Kenneth Noll (kenneth.noll@uconn.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 36410 | 36485 | + | 76 | 154248705 | Fnod_R0001 | - | 07 Asn tRNA |
| 38615 | 38690 | + | 76 | 154248705 | Fnod_R0002 | - | 07 Asn tRNA |
| 118612 | 118687 | + | 76 | 154248705 | Fnod_R0003 | - | 01 Gly tRNA |
| 360021 | 360097 | - | 77 | 154248705 | Fnod_R0004 | - | 11 Arg tRNA |
| 400417 | 400492 | + | 76 | 154248705 | Fnod_R0005 | - | 16 Met tRNA |
| 400531 | 400606 | + | 76 | 154248705 | Fnod_R0006 | - | 12 Thr tRNA |
| 400645 | 400720 | + | 76 | 154248705 | Fnod_R0007 | - | 12 Thr tRNA |
| 464706 | 464783 | - | 78 | 154248705 | Fnod_R0008 | - | 06 Asp tRNA |
| 568302 | 568377 | + | 76 | 154248705 | Fnod_R0009 | - | 02 Ala tRNA |
| 723775 | 723849 | + | 75 | 154248705 | Fnod_R0010 | - | 04 Glu tRNA |
| 723873 | 723947 | + | 75 | 154248705 | Fnod_R0011 | - | 11 Arg tRNA |
| 723953 | 724028 | + | 76 | 154248705 | Fnod_R0012 | - | 10 Lys tRNA |
| 737090 | 737165 | - | 76 | 154248705 | Fnod_R0013 | - | 16 Met tRNA |
| 737173 | 737249 | - | 77 | 154248705 | Fnod_R0014 | - | 19 Cys tRNA |
| 799989 | 800079 | - | 91 | 154248705 | Fnod_R0015 | - | 08 Ser tRNA |
| 808486 | 808601 | - | 116 | 154248705 | Fnod_R0016 | - | 5S ribosomal RNA |
| 808629 | 810537 | - | 1909 | 154248705 | Fnod_R0017 | - | |
| 811605 | 812621 | - | 1017 | 154248705 | Fnod_R0017 | - | |
| 812659 | 812734 | - | 76 | 154248705 | Fnod_R0018 | - | 02 Ala tRNA |
| 812740 | 812816 | - | 77 | 154248705 | Fnod_R0019 | - | 14 Ile tRNA |
| 812858 | 814365 | - | 1508 | 154248705 | Fnod_R0020 | - | 16S ribosomal RNA |
| 863991 | 864078 | + | 88 | 154248705 | Fnod_R0021 | - | 08 Ser tRNA |
| 901024 | 901098 | + | 75 | 154248705 | Fnod_R0022 | - | 13 Val tRNA |
| 926644 | 926719 | - | 76 | 154248705 | Fnod_R0023 | - | 20 Trp tRNA |
| 926951 | 927037 | - | 87 | 154248705 | Fnod_R0024 | - | 18 Tyr tRNA |
| 927069 | 927144 | - | 76 | 154248705 | Fnod_R0025 | - | 12 Thr tRNA |
| 935367 | 935442 | + | 76 | 154248705 | Fnod_R0026 | - | 10 Lys tRNA |
| 935452 | 935541 | + | 90 | 154248705 | Fnod_R0027 | - | 15 Leu tRNA |
| 935568 | 935642 | + | 75 | 154248705 | Fnod_R0028 | - | 01 Gly tRNA |
| 935683 | 935770 | + | 88 | 154248705 | Fnod_R0029 | - | 15 Leu tRNA |
| 935845 | 936205 | + | 361 | 154248705 | Fnod_R0030 | - | tmRNA |
| 946700 | 946776 | + | 77 | 154248705 | Fnod_R0031 | - | 12 Thr tRNA |
| 981235 | 981338 | + | 104 | 154248705 | Fnod_R0032 | - | SRP RNA; RNA component of signal recognition particle |
| 981444 | 981715 | - | 272 | 154248705 | Fnod_R0033 | - | RNA component of RNaseP |
| 1049789 | 1049878 | + | 90 | 154248705 | Fnod_R0034 | - | 15 Leu tRNA |
| 1049920 | 1049996 | + | 77 | 154248705 | Fnod_R0035 | - | 16 Met tRNA |
| 1132987 | 1133063 | - | 77 | 154248705 | Fnod_R0036 | - | 11 Arg tRNA |
| 1133095 | 1133170 | - | 76 | 154248705 | Fnod_R0037 | - | 09 His tRNA |
| 1133206 | 1133282 | - | 77 | 154248705 | Fnod_R0038 | - | 11 Arg tRNA |
| 1133310 | 1133385 | - | 76 | 154248705 | Fnod_R0039 | - | 01 Gly tRNA |
| 1133389 | 1133465 | - | 77 | 154248705 | Fnod_R0040 | - | 03 Pro tRNA |
| 1136879 | 1136954 | - | 76 | 154248705 | Fnod_R0041 | - | 17 Phe tRNA |
| 1137015 | 1137089 | - | 75 | 154248705 | Fnod_R0042 | - | 13 Val tRNA |
| 1137124 | 1137199 | - | 76 | 154248705 | Fnod_R0043 | - | 04 Glu tRNA |
| 1201212 | 1201288 | - | 77 | 154248705 | Fnod_R0044 | - | 03 Pro tRNA |
| 1228972 | 1229046 | - | 75 | 154248705 | Fnod_R0045 | - | 05 Gln tRNA |
| 1229097 | 1229171 | - | 75 | 154248705 | Fnod_R0046 | - | 13 Val tRNA |
| 1231370 | 1231459 | + | 90 | 154248705 | Fnod_R0047 | - | 08 Ser tRNA |
| 1280569 | 1280684 | - | 116 | 154248705 | Fnod_R0048 | - | 5S ribosomal RNA |
| 1280727 | 1283637 | - | 2911 | 154248705 | Fnod_R0049 | - | 23S ribosomal RNA |
| 1283675 | 1283750 | - | 76 | 154248705 | Fnod_R0050 | - | 02 Ala tRNA |
| 1283756 | 1283832 | - | 77 | 154248705 | Fnod_R0051 | - | 14 Ile tRNA |
| 1283874 | 1285381 | - | 1508 | 154248705 | Fnod_R0052 | - | 16S ribosomal RNA |
| 1577787 | 1577860 | - | 74 | 154248705 | Fnod_R0053 | - | 05 Gln tRNA |
| 1677953 | 1678028 | - | 76 | 154248705 | Fnod_R0054 | - | 02 Ala tRNA |
| 1685728 | 1685815 | + | 88 | 154248705 | Fnod_R0055 | - | 15 Leu tRNA |
| 1730518 | 1730607 | + | 90 | 154248705 | Fnod_R0056 | - | 08 Ser tRNA |
| 1730682 | 1730758 | + | 77 | 154248705 | Fnod_R0057 | - | 11 Arg tRNA |
| 1887004 | 1887080 | - | 77 | 154248705 | Fnod_R0058 | - | 03 Pro tRNA |
| 1929272 | 1929356 | + | 85 | 154248705 | Fnod_R0059 | - | 15 Leu tRNA |