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   LOCUS       NC_009664            4761183 bp    DNA     linear   BCT 25-JUL-2007
   DEFINITION  Kineococcus radiotolerans SRS30216, complete genome.
   ACCESSION   NC_009664
   VERSION     NC_009664.1  GI:152963972
   KEYWORDS    .
   SOURCE      Kineococcus radiotolerans SRS30216
     ORGANISM  Kineococcus radiotolerans SRS30216
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Frankineae; Kineosporiaceae; Kineococcus.
   REFERENCE   1  (bases 1 to 4761183)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
               Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Bagwell,C.E.,
               Shimkets,L., Berry,C.J., Fliermans,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Kineococcus radiotolerans
               SRS30216
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4761183)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (24-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4761183)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Saunders,E.,
               Brettin,T., Bruce,D., Detter,J.C., Han,C., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Bagwell,C.E.,
               Shimkets,L., Berry,C.J., Fliermans,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JUL-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000750.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436090
               Source DNA and bacteria available from Christopher E. Bagwell
               (christopher.bagwell@srnl.doe.gov)
               Contacts: Christopher E. Bagwell (christopher.bagwell@srnl.doe.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Notes: Kineococcus radiotolerans SRS30216 has 3
               replicons, a chromosome and two plasmids.  The chromosome and the
               largest plasmid, plasmid 1, both appear to be linear.  We have
               performed various pcr reactions in an attempt to circularize them.
               None have succeeded.
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
12075 12151 + 77 152963972 Krad_R0001 - 14 Ile tRNA
24936 25011 + 76 152963972 Krad_R0002 - 02 Ala tRNA
79441 79524 + 84 152963972 Krad_R0003 - 15 Leu tRNA
334879 334974 + 96 152963972 Krad_R0004 - 08 Ser tRNA
455758 455834 + 77 152963972 Krad_R0005 - 03 Pro tRNA
493327 493419 - 93 152963972 Krad_R0006 - SRP RNA; RNA component of signal recognition particle
493531 493618 + 88 152963972 Krad_R0007 - 08 Ser tRNA
494774 494863 - 90 152963972 Krad_R0008 - 08 Ser tRNA
499324 499396 - 73 152963972 Krad_R0009 - 11 Arg tRNA
499570 499663 - 94 152963972 Krad_R0010 - 08 Ser tRNA
537762 537838 + 77 152963972 Krad_R0011 - 12 Thr tRNA
704531 704612 + 82 152963972 Krad_R0012 - 18 Tyr tRNA
704706 704777 + 72 152963972 Krad_R0013 - 12 Thr tRNA
704807 704879 + 73 152963972 Krad_R0014 - 16 Met tRNA
713973 714048 + 76 152963972 Krad_R0015 - 20 Trp tRNA
873295 873370 + 76 152963972 Krad_R0016 - 10 Lys tRNA
985221 985296 + 76 152963972 Krad_R0017 - 12 Thr tRNA
1101585 1101656 + 72 152963972 Krad_R0018 - 05 Gln tRNA
1135911 1135994 + 84 152963972 Krad_R0019 - 15 Leu tRNA
1264019 1264095 + 77 152963972 Krad_R0020 - 16 Met tRNA
1264230 1264306 + 77 152963972 Krad_R0021 - 16 Met tRNA
1326369 1326443 - 75 152963972 Krad_R0022 - 11 Arg tRNA
1450054 1450125 + 72 152963972 Krad_R0023 - 05 Gln tRNA
1450214 1450286 + 73 152963972 Krad_R0024 - 04 Glu tRNA
1450332 1450404 + 73 152963972 Krad_R0025 - 04 Glu tRNA
1718229 1718324 + 96 152963972 Krad_R0026 - Sec tRNA
1807886 1807970 + 85 152963972 Krad_R0027 - 15 Leu tRNA
3035499 3035572 + 74 152963972 Krad_R0028 - 15 Leu tRNA
3146173 3146247 - 75 152963972 Krad_R0029 - 13 Val tRNA
3147788 3147860 + 73 152963972 Krad_R0030 - 01 Gly tRNA
3147895 3147968 + 74 152963972 Krad_R0031 - 19 Cys tRNA
3148003 3148077 + 75 152963972 Krad_R0032 - 13 Val tRNA
3193009 3193085 - 77 152963972 Krad_R0033 - 03 Pro tRNA
3235427 3235542 - 116 152963972 Krad_R0034 - 5S ribosomal RNA
3235747 3238893 - 3147 152963972 Krad_R0035 - 23S ribosomal RNA
3239500 3241011 - 1512 152963972 Krad_R0036 - 16S ribosomal RNA
3426178 3426493 - 316 152963972 Krad_R0037 - RNA component of RNaseP
3436766 3436841 + 76 152963972 Krad_R0038 - 13 Val tRNA
3456585 3456661 - 77 152963972 Krad_R0039 - 16 Met tRNA
3458764 3458836 - 73 152963972 Krad_R0040 - 07 Asn tRNA
3559912 3559987 - 76 152963972 Krad_R0041 - 02 Ala tRNA
3648191 3648264 - 74 152963972 Krad_R0042 - 03 Pro tRNA
3648368 3648441 + 74 152963972 Krad_R0043 - 01 Gly tRNA
3683908 3683980 + 73 152963972 Krad_R0044 - 11 Arg tRNA
3837067 3837142 - 76 152963972 Krad_R0045 - 02 Ala tRNA
3860501 3860573 + 73 152963972 Krad_R0046 - 11 Arg tRNA
3877860 3877935 + 76 152963972 Krad_R0047 - 09 His tRNA
3879349 3879424 + 76 152963972 Krad_R0048 - 10 Lys tRNA
3918235 3918316 + 82 152963972 Krad_R0049 - 15 Leu tRNA
3936472 3936836 - 365 152963972 Krad_R0050 - tmRNA
3963079 3963194 - 116 152963972 Krad_R0051 - 5S ribosomal RNA
3963399 3966545 - 3147 152963972 Krad_R0052 - 23S ribosomal RNA
3967152 3968663 - 1512 152963972 Krad_R0053 - 16S ribosomal RNA
4229114 4229186 + 73 152963972 Krad_R0054 - 04 Glu tRNA
4229288 4229361 + 74 152963972 Krad_R0055 - 06 Asp tRNA
4229393 4229468 + 76 152963972 Krad_R0056 - 17 Phe tRNA
4440206 4440279 - 74 152963972 Krad_R0057 - 01 Gly tRNA
4577008 4577123 - 116 152963972 Krad_R0058 - 5S ribosomal RNA
4577328 4580474 - 3147 152963972 Krad_R0059 - 23S ribosomal RNA
4581081 4582592 - 1512 152963972 Krad_R0060 - 16S ribosomal RNA
4664408 4664523 - 116 152963972 Krad_R0061 - 5S ribosomal RNA
4664728 4667874 - 3147 152963972 Krad_R0062 - 23S ribosomal RNA
4668481 4669992 - 1512 152963972 Krad_R0063 - 16S ribosomal RNA
4721666 4721738 + 73 152963972 Krad_R0064 - 01 Gly tRNA
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