LOCUS NC_009654 5100344 bp DNA circular BCT 25-JUL-2007
DEFINITION Marinomonas sp. MWYL1, complete genome.
ACCESSION NC_009654
VERSION NC_009654.1 GI:152994043
KEYWORDS .
SOURCE Marinomonas sp. MWYL1
ORGANISM Marinomonas sp. MWYL1
Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
Marinomonas.
REFERENCE 1 (bases 1 to 5100344)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Kim,E., Johnston,A.W.B., Todd,J.D., Rogers,R.,
Wexler,M., Bond,P.L., Li,Y. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Marinomonas sp. MWYL1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5100344)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Kim,E., Johnston,A.W.B., Todd,J.D., Rogers,R.,
Wexler,M., Bond,P.L., Li,Y. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (27-JUN-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFERENCE 3 (bases 1 to 5100344)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-NOV-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000749.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4002558
Source DNA and bacteria available from Andrew W.B. Johnston
(a.johnston@uea.ac.uk)
Contacts: Andrew W.B. Johnston (a.johnston@uea.ac.uk)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 618906 | 618981 | + | 76 | 152994043 | Mmwyl1_R0001 | - | 17 Phe tRNA |
| 619081 | 619156 | + | 76 | 152994043 | Mmwyl1_R0002 | - | 17 Phe tRNA |
| 1074351 | 1074427 | + | 77 | 152994043 | Mmwyl1_R0003 | - | 16 Met tRNA |
| 1141526 | 1141611 | + | 86 | 152994043 | Mmwyl1_R0004 | - | 15 Leu tRNA |
| 1183613 | 1183688 | - | 76 | 152994043 | Mmwyl1_R0005 | - | 11 Arg tRNA |
| 1190886 | 1192417 | + | 1532 | 152994043 | Mmwyl1_R0006 | - | 16S ribosomal RNA |
| 1192523 | 1192599 | + | 77 | 152994043 | Mmwyl1_R0007 | - | 14 Ile tRNA |
| 1192620 | 1192695 | + | 76 | 152994043 | Mmwyl1_R0008 | - | 02 Ala tRNA |
| 1193004 | 1195901 | + | 2898 | 152994043 | Mmwyl1_R0009 | - | 23S ribosomal RNA |
| 1196114 | 1196227 | + | 114 | 152994043 | Mmwyl1_R0010 | - | 5S ribosomal RNA |
| 1485412 | 1486943 | + | 1532 | 152994043 | Mmwyl1_R0011 | - | 16S ribosomal RNA |
| 1487049 | 1487125 | + | 77 | 152994043 | Mmwyl1_R0012 | - | 14 Ile tRNA |
| 1487146 | 1487221 | + | 76 | 152994043 | Mmwyl1_R0013 | - | 02 Ala tRNA |
| 1487530 | 1490427 | + | 2898 | 152994043 | Mmwyl1_R0014 | - | 23S ribosomal RNA |
| 1490621 | 1490734 | + | 114 | 152994043 | Mmwyl1_R0015 | - | 5S ribosomal RNA |
| 1943445 | 1943521 | + | 77 | 152994043 | Mmwyl1_R0016 | - | 11 Arg tRNA |
| 1949982 | 1950058 | + | 77 | 152994043 | Mmwyl1_R0017 | - | 06 Asp tRNA |
| 2099269 | 2099345 | + | 77 | 152994043 | Mmwyl1_R0018 | - | 16 Met tRNA |
| 2099446 | 2099522 | + | 77 | 152994043 | Mmwyl1_R0019 | - | 16 Met tRNA |
| 2099573 | 2099649 | + | 77 | 152994043 | Mmwyl1_R0020 | - | 16 Met tRNA |
| 2099700 | 2099776 | + | 77 | 152994043 | Mmwyl1_R0021 | - | 16 Met tRNA |
| 2099827 | 2099903 | + | 77 | 152994043 | Mmwyl1_R0022 | - | 16 Met tRNA |
| 2100004 | 2100080 | + | 77 | 152994043 | Mmwyl1_R0023 | - | 16 Met tRNA |
| 2474439 | 2474514 | + | 76 | 152994043 | Mmwyl1_R0024 | - | 10 Lys tRNA |
| 2474544 | 2474619 | + | 76 | 152994043 | Mmwyl1_R0025 | - | 10 Lys tRNA |
| 2478015 | 2478102 | + | 88 | 152994043 | Mmwyl1_R0026 | - | 08 Ser tRNA |
| 2550515 | 2550590 | - | 76 | 152994043 | Mmwyl1_R0027 | - | 04 Glu tRNA |
| 2550618 | 2550692 | - | 75 | 152994043 | Mmwyl1_R0028 | - | 01 Gly tRNA |
| 2550748 | 2550823 | - | 76 | 152994043 | Mmwyl1_R0029 | - | 04 Glu tRNA |
| 2550889 | 2550964 | - | 76 | 152994043 | Mmwyl1_R0030 | - | 04 Glu tRNA |
| 2551025 | 2551099 | - | 75 | 152994043 | Mmwyl1_R0031 | - | 01 Gly tRNA |
| 2551183 | 2551258 | - | 76 | 152994043 | Mmwyl1_R0032 | - | 04 Glu tRNA |
| 2551319 | 2551393 | - | 75 | 152994043 | Mmwyl1_R0033 | - | 01 Gly tRNA |
| 2551477 | 2551552 | - | 76 | 152994043 | Mmwyl1_R0034 | - | 04 Glu tRNA |
| 2551613 | 2551687 | - | 75 | 152994043 | Mmwyl1_R0035 | - | 01 Gly tRNA |
| 2551771 | 2551846 | - | 76 | 152994043 | Mmwyl1_R0036 | - | 04 Glu tRNA |
| 2551907 | 2551981 | - | 75 | 152994043 | Mmwyl1_R0037 | - | 01 Gly tRNA |
| 2552042 | 2552117 | - | 76 | 152994043 | Mmwyl1_R0038 | - | 04 Glu tRNA |
| 2630183 | 2630297 | - | 115 | 152994043 | Mmwyl1_R0039 | - | 5S ribosomal RNA |
| 2630383 | 2630496 | - | 114 | 152994043 | Mmwyl1_R0040 | - | 5S ribosomal RNA |
| 2630690 | 2633587 | - | 2898 | 152994043 | Mmwyl1_R0041 | - | 23S ribosomal RNA |
| 2634032 | 2635563 | - | 1532 | 152994043 | Mmwyl1_R0042 | - | 16S ribosomal RNA |
| 2683321 | 2683405 | + | 85 | 152994043 | Mmwyl1_R0043 | - | 15 Leu tRNA |
| 2735359 | 2735475 | - | 117 | 152994043 | Mmwyl1_R0044 | - | SRP RNA; RNA component of signal recognition particle |
| 2867288 | 2867363 | - | 76 | 152994043 | Mmwyl1_R0045 | - | 13 Val tRNA |
| 2867521 | 2867597 | - | 77 | 152994043 | Mmwyl1_R0046 | - | 06 Asp tRNA |
| 2930240 | 2930315 | - | 76 | 152994043 | Mmwyl1_R0047 | - | 13 Val tRNA |
| 2930374 | 2930450 | - | 77 | 152994043 | Mmwyl1_R0048 | - | 06 Asp tRNA |
| 2930502 | 2930577 | - | 76 | 152994043 | Mmwyl1_R0049 | - | 13 Val tRNA |
| 2930636 | 2930712 | - | 77 | 152994043 | Mmwyl1_R0050 | - | 06 Asp tRNA |
| 2930764 | 2930839 | - | 76 | 152994043 | Mmwyl1_R0051 | - | 13 Val tRNA |
| 2930898 | 2930974 | - | 77 | 152994043 | Mmwyl1_R0052 | - | 06 Asp tRNA |
| 2931026 | 2931101 | - | 76 | 152994043 | Mmwyl1_R0053 | - | 13 Val tRNA |
| 2931160 | 2931236 | - | 77 | 152994043 | Mmwyl1_R0054 | - | 06 Asp tRNA |
| 2931288 | 2931363 | - | 76 | 152994043 | Mmwyl1_R0055 | - | 13 Val tRNA |
| 2931475 | 2931550 | - | 76 | 152994043 | Mmwyl1_R0056 | - | 12 Thr tRNA |
| 2931596 | 2931671 | - | 76 | 152994043 | Mmwyl1_R0057 | - | 12 Thr tRNA |
| 2931712 | 2931787 | - | 76 | 152994043 | Mmwyl1_R0058 | - | 12 Thr tRNA |
| 2931859 | 2931934 | - | 76 | 152994043 | Mmwyl1_R0059 | - | 12 Thr tRNA |
| 2931948 | 2932024 | - | 77 | 152994043 | Mmwyl1_R0060 | - | 03 Pro tRNA |
| 2967321 | 2967615 | - | 295 | 152994043 | Mmwyl1_R0061 | - | RNA component of RNaseP |
| 2994078 | 2994162 | + | 85 | 152994043 | Mmwyl1_R0062 | - | 15 Leu tRNA |
| 3646166 | 3646242 | - | 77 | 152994043 | Mmwyl1_R0063 | - | 13 Val tRNA |
| 3669720 | 3669795 | - | 76 | 152994043 | Mmwyl1_R0064 | - | 02 Ala tRNA |
| 3669869 | 3669944 | - | 76 | 152994043 | Mmwyl1_R0065 | - | 02 Ala tRNA |
| 3671436 | 3671520 | + | 85 | 152994043 | Mmwyl1_R0066 | - | 15 Leu tRNA |
| 3675474 | 3675559 | - | 86 | 152994043 | Mmwyl1_R0067 | - | 15 Leu tRNA |
| 3675571 | 3675644 | - | 74 | 152994043 | Mmwyl1_R0068 | - | 19 Cys tRNA |
| 3675668 | 3675742 | - | 75 | 152994043 | Mmwyl1_R0069 | - | 01 Gly tRNA |
| 4071793 | 4071867 | + | 75 | 152994043 | Mmwyl1_R0070 | - | 05 Gln tRNA |
| 4071878 | 4071954 | + | 77 | 152994043 | Mmwyl1_R0071 | - | 16 Met tRNA |
| 4071965 | 4072039 | + | 75 | 152994043 | Mmwyl1_R0072 | - | 05 Gln tRNA |
| 4072073 | 4072149 | + | 77 | 152994043 | Mmwyl1_R0073 | - | 16 Met tRNA |
| 4072172 | 4072246 | + | 75 | 152994043 | Mmwyl1_R0074 | - | 05 Gln tRNA |
| 4087220 | 4087333 | - | 114 | 152994043 | Mmwyl1_R0075 | - | 5S ribosomal RNA |
| 4087547 | 4090444 | - | 2898 | 152994043 | Mmwyl1_R0076 | - | 23S ribosomal RNA |
| 4090766 | 4092297 | - | 1532 | 152994043 | Mmwyl1_R0077 | - | 16S ribosomal RNA |
| 4097247 | 4097323 | - | 77 | 152994043 | Mmwyl1_R0078 | - | 11 Arg tRNA |
| 4097387 | 4097463 | - | 77 | 152994043 | Mmwyl1_R0079 | - | 11 Arg tRNA |
| 4097525 | 4097601 | - | 77 | 152994043 | Mmwyl1_R0080 | - | 11 Arg tRNA |
| 4097664 | 4097753 | - | 90 | 152994043 | Mmwyl1_R0081 | - | 08 Ser tRNA |
| 4123727 | 4123803 | - | 77 | 152994043 | Mmwyl1_R0082 | - | 11 Arg tRNA |
| 4266717 | 4266800 | + | 84 | 152994043 | Mmwyl1_R0083 | - | 18 Tyr tRNA |
| 4267470 | 4267545 | - | 76 | 152994043 | Mmwyl1_R0084 | - | 10 Lys tRNA |
| 4267574 | 4267650 | - | 77 | 152994043 | Mmwyl1_R0085 | - | 03 Pro tRNA |
| 4267652 | 4267727 | - | 76 | 152994043 | Mmwyl1_R0086 | - | 07 Asn tRNA |
| 4267761 | 4267836 | - | 76 | 152994043 | Mmwyl1_R0087 | - | 10 Lys tRNA |
| 4267850 | 4267925 | - | 76 | 152994043 | Mmwyl1_R0088 | - | 09 His tRNA |
| 4267954 | 4268030 | - | 77 | 152994043 | Mmwyl1_R0089 | - | 03 Pro tRNA |
| 4268032 | 4268107 | - | 76 | 152994043 | Mmwyl1_R0090 | - | 07 Asn tRNA |
| 4268149 | 4268239 | - | 91 | 152994043 | Mmwyl1_R0091 | - | 08 Ser tRNA |
| 4479688 | 4480048 | + | 361 | 152994043 | Mmwyl1_R0092 | - | tmRNA |
| 4514930 | 4515043 | - | 114 | 152994043 | Mmwyl1_R0093 | - | 5S ribosomal RNA |
| 4515234 | 4518131 | - | 2898 | 152994043 | Mmwyl1_R0094 | - | 23S ribosomal RNA |
| 4518440 | 4518515 | - | 76 | 152994043 | Mmwyl1_R0095 | - | 02 Ala tRNA |
| 4518536 | 4518612 | - | 77 | 152994043 | Mmwyl1_R0096 | - | 14 Ile tRNA |
| 4518718 | 4520249 | - | 1532 | 152994043 | Mmwyl1_R0097 | - | 16S ribosomal RNA |
| 4683716 | 4683829 | - | 114 | 152994043 | Mmwyl1_R0098 | - | 5S ribosomal RNA |
| 4684020 | 4686917 | - | 2898 | 152994043 | Mmwyl1_R0099 | - | 23S ribosomal RNA |
| 4687284 | 4688815 | - | 1532 | 152994043 | Mmwyl1_R0100 | - | 16S ribosomal RNA |
| 4793295 | 4793408 | - | 114 | 152994043 | Mmwyl1_R0101 | - | 5S ribosomal RNA |
| 4793622 | 4796519 | - | 2898 | 152994043 | Mmwyl1_R0102 | - | 23S ribosomal RNA |
| 4796886 | 4798417 | - | 1532 | 152994043 | Mmwyl1_R0103 | - | 16S ribosomal RNA |
| 4855797 | 4855872 | - | 76 | 152994043 | Mmwyl1_R0104 | - | 20 Trp tRNA |
| 4855989 | 4856064 | - | 76 | 152994043 | Mmwyl1_R0105 | - | 12 Thr tRNA |
| 4856066 | 4856140 | - | 75 | 152994043 | Mmwyl1_R0106 | - | 01 Gly tRNA |
| 4856144 | 4856227 | - | 84 | 152994043 | Mmwyl1_R0107 | - | 18 Tyr tRNA |
| 4876749 | 4876862 | - | 114 | 152994043 | Mmwyl1_R0108 | - | 5S ribosomal RNA |
| 4877052 | 4879949 | - | 2898 | 152994043 | Mmwyl1_R0109 | - | 23S ribosomal RNA |
| 4880316 | 4881847 | - | 1532 | 152994043 | Mmwyl1_R0110 | - | 16S ribosomal RNA |
| 4896975 | 4897059 | - | 85 | 152994043 | Mmwyl1_R0111 | - | 15 Leu tRNA |