LOCUS NC_009633 4929566 bp DNA circular BCT 03-JUL-2007
DEFINITION Alkaliphilus metalliredigens QYMF, complete genome.
ACCESSION NC_009633
VERSION NC_009633.1 GI:150387853
KEYWORDS .
SOURCE Alkaliphilus metalliredigens QYMF
ORGANISM Alkaliphilus metalliredigens QYMF
Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
Alkaliphilus.
REFERENCE 1 (bases 1 to 4929566)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J.,
Fields,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Alkaliphilus metalliredigens QYMF
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 4929566)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (03-JUL-2007) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4929566)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,
Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Ye,Q., Zhou,J.,
Fields,M. and Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000724.
URL -- http://www.jgi.doe.gov
JGI Project ID: 3634496
Source DNA and bacteria available from Matthew Fields
(matthew.fields@erc.montana.edu)
Contacts: Matthew Fields (matthew.fields@erc.montana.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 11329 | 12849 | + | 1521 | 150387853 | Amet_R0001 | - | 16S ribosomal RNA |
| 13209 | 16143 | + | 2935 | 150387853 | Amet_R0002 | - | 23S ribosomal RNA |
| 16271 | 16386 | + | 116 | 150387853 | Amet_R0003 | - | 5S ribosomal RNA |
| 22384 | 23904 | + | 1521 | 150387853 | Amet_R0004 | - | 16S ribosomal RNA |
| 24268 | 27202 | + | 2935 | 150387853 | Amet_R0005 | - | 23S ribosomal RNA |
| 27463 | 27578 | + | 116 | 150387853 | Amet_R0006 | - | 5S ribosomal RNA |
| 38852 | 38928 | + | 77 | 150387853 | Amet_R0007 | - | 11 Arg tRNA |
| 39483 | 39570 | + | 88 | 150387853 | Amet_R0008 | - | 08 Ser tRNA |
| 39705 | 39805 | + | 101 | 150387853 | Amet_R0009 | - | SRP RNA; RNA component of signal recognition particle |
| 48874 | 50394 | + | 1521 | 150387853 | Amet_R0010 | - | 16S ribosomal RNA |
| 50461 | 50536 | + | 76 | 150387853 | Amet_R0011 | - | 02 Ala tRNA |
| 50776 | 53710 | + | 2935 | 150387853 | Amet_R0012 | - | 23S ribosomal RNA |
| 53891 | 54006 | + | 116 | 150387853 | Amet_R0013 | - | 5S ribosomal RNA |
| 54401 | 55921 | + | 1521 | 150387853 | Amet_R0014 | - | 16S ribosomal RNA |
| 56089 | 56165 | + | 77 | 150387853 | Amet_R0015 | - | 14 Ile tRNA |
| 56325 | 59259 | + | 2935 | 150387853 | Amet_R0016 | - | 23S ribosomal RNA |
| 59440 | 59555 | + | 116 | 150387853 | Amet_R0017 | - | 5S ribosomal RNA |
| 996643 | 996716 | + | 74 | 150387853 | Amet_R0018 | - | 01 Gly tRNA |
| 996725 | 996801 | + | 77 | 150387853 | Amet_R0019 | - | 11 Arg tRNA |
| 996844 | 996919 | + | 76 | 150387853 | Amet_R0020 | - | 09 His tRNA |
| 996956 | 997031 | + | 76 | 150387853 | Amet_R0021 | - | 09 His tRNA |
| 997036 | 997111 | + | 76 | 150387853 | Amet_R0022 | - | 05 Gln tRNA |
| 997147 | 997223 | + | 77 | 150387853 | Amet_R0023 | - | 11 Arg tRNA |
| 997239 | 997315 | + | 77 | 150387853 | Amet_R0024 | - | 11 Arg tRNA |
| 1009021 | 1009100 | + | 80 | 150387853 | Amet_R0025 | - | Xaa tRNA |
| 1715308 | 1715383 | + | 76 | 150387853 | Amet_R0026 | - | 13 Val tRNA |
| 1715384 | 1715459 | + | 76 | 150387853 | Amet_R0027 | - | 17 Phe tRNA |
| 1715478 | 1715552 | + | 75 | 150387853 | Amet_R0028 | - | 19 Cys tRNA |
| 1837188 | 1838708 | + | 1521 | 150387853 | Amet_R0029 | - | 16S ribosomal RNA |
| 1838777 | 1838852 | + | 76 | 150387853 | Amet_R0030 | - | 02 Ala tRNA |
| 1839146 | 1842080 | + | 2935 | 150387853 | Amet_R0031 | - | 23S ribosomal RNA |
| 1842262 | 1842377 | + | 116 | 150387853 | Amet_R0032 | - | 5S ribosomal RNA |
| 1842385 | 1842459 | + | 75 | 150387853 | Amet_R0033 | - | 07 Asn tRNA |
| 1842465 | 1842553 | + | 89 | 150387853 | Amet_R0034 | - | 15 Leu tRNA |
| 1842569 | 1842644 | + | 76 | 150387853 | Amet_R0035 | - | 16 Met tRNA |
| 1842650 | 1842726 | + | 77 | 150387853 | Amet_R0036 | - | 16 Met tRNA |
| 1842736 | 1842810 | + | 75 | 150387853 | Amet_R0037 | - | 04 Glu tRNA |
| 1842819 | 1842894 | + | 76 | 150387853 | Amet_R0038 | - | 13 Val tRNA |
| 1843020 | 1843096 | + | 77 | 150387853 | Amet_R0039 | - | 06 Asp tRNA |
| 1843166 | 1843250 | + | 85 | 150387853 | Amet_R0040 | - | 18 Tyr tRNA |
| 1843290 | 1843372 | + | 83 | 150387853 | Amet_R0041 | - | 15 Leu tRNA |
| 1843694 | 1843768 | + | 75 | 150387853 | Amet_R0042 | - | 01 Gly tRNA |
| 1843781 | 1843856 | + | 76 | 150387853 | Amet_R0043 | - | 09 His tRNA |
| 1843869 | 1843943 | + | 75 | 150387853 | Amet_R0044 | - | 19 Cys tRNA |
| 1843948 | 1844024 | + | 77 | 150387853 | Amet_R0045 | - | 11 Arg tRNA |
| 2399957 | 2400049 | + | 93 | 150387853 | Amet_R0046 | - | Sec tRNA |
| 2847478 | 2847546 | - | 69 | 150387853 | Amet_R0047 | - | Xaa tRNA |
| 2867783 | 2867859 | - | 77 | 150387853 | Amet_R0048 | - | 03 Pro tRNA |
| 3018739 | 3019075 | - | 337 | 150387853 | Amet_R0049 | - | RNA component of RNaseP |
| 3165279 | 3165365 | - | 87 | 150387853 | Amet_R0050 | - | 15 Leu tRNA |
| 3174464 | 3174550 | + | 87 | 150387853 | Amet_R0051 | - | 15 Leu tRNA |
| 3221892 | 3221967 | + | 76 | 150387853 | Amet_R0052 | - | 02 Ala tRNA |
| 3236999 | 3237075 | - | 77 | 150387853 | Amet_R0053 | - | 13 Val tRNA |
| 3362100 | 3362174 | - | 75 | 150387853 | Amet_R0054 | - | 12 Thr tRNA |
| 3659888 | 3660242 | - | 355 | 150387853 | Amet_R0055 | - | tmRNA |
| 4429238 | 4429313 | - | 76 | 150387853 | Amet_R0056 | - | 17 Phe tRNA |
| 4429323 | 4429399 | - | 77 | 150387853 | Amet_R0057 | - | 14 Ile tRNA |
| 4429405 | 4429480 | - | 76 | 150387853 | Amet_R0058 | - | 10 Lys tRNA |
| 4429485 | 4429559 | - | 75 | 150387853 | Amet_R0059 | - | 01 Gly tRNA |
| 4429587 | 4429669 | - | 83 | 150387853 | Amet_R0060 | - | 15 Leu tRNA |
| 4429807 | 4429891 | - | 85 | 150387853 | Amet_R0061 | - | 18 Tyr tRNA |
| 4429904 | 4429979 | - | 76 | 150387853 | Amet_R0062 | - | 12 Thr tRNA |
| 4429993 | 4430069 | - | 77 | 150387853 | Amet_R0063 | - | 06 Asp tRNA |
| 4430196 | 4430271 | - | 76 | 150387853 | Amet_R0064 | - | 13 Val tRNA |
| 4430284 | 4430358 | - | 75 | 150387853 | Amet_R0065 | - | 04 Glu tRNA |
| 4430365 | 4430440 | - | 76 | 150387853 | Amet_R0066 | - | 16 Met tRNA |
| 4430456 | 4430544 | - | 89 | 150387853 | Amet_R0067 | - | 15 Leu tRNA |
| 4430550 | 4430624 | - | 75 | 150387853 | Amet_R0068 | - | 07 Asn tRNA |
| 4430632 | 4430747 | - | 116 | 150387853 | Amet_R0069 | - | 5S ribosomal RNA |
| 4430876 | 4433810 | - | 2935 | 150387853 | Amet_R0070 | - | 23S ribosomal RNA |
| 4434170 | 4435690 | - | 1521 | 150387853 | Amet_R0071 | - | 16S ribosomal RNA |
| 4436016 | 4436089 | - | 74 | 150387853 | Amet_R0072 | - | 01 Gly tRNA |
| 4436098 | 4436173 | - | 76 | 150387853 | Amet_R0073 | - | 12 Thr tRNA |
| 4436187 | 4436263 | - | 77 | 150387853 | Amet_R0074 | - | 06 Asp tRNA |
| 4436276 | 4436352 | - | 77 | 150387853 | Amet_R0075 | - | 16 Met tRNA |
| 4436436 | 4436511 | - | 76 | 150387853 | Amet_R0076 | - | 16 Met tRNA |
| 4436589 | 4436664 | - | 76 | 150387853 | Amet_R0077 | - | 17 Phe tRNA |
| 4436674 | 4436750 | - | 77 | 150387853 | Amet_R0078 | - | 14 Ile tRNA |
| 4436756 | 4436832 | - | 77 | 150387853 | Amet_R0079 | - | 03 Pro tRNA |
| 4436839 | 4436914 | - | 76 | 150387853 | Amet_R0080 | - | 20 Trp tRNA |
| 4436937 | 4437013 | - | 77 | 150387853 | Amet_R0081 | - | 16 Met tRNA |
| 4437028 | 4437104 | - | 77 | 150387853 | Amet_R0082 | - | 03 Pro tRNA |
| 4437114 | 4437205 | - | 92 | 150387853 | Amet_R0083 | - | 08 Ser tRNA |
| 4437220 | 4437308 | - | 89 | 150387853 | Amet_R0084 | - | 08 Ser tRNA |
| 4437317 | 4437392 | - | 76 | 150387853 | Amet_R0085 | - | 10 Lys tRNA |
| 4437397 | 4437472 | - | 76 | 150387853 | Amet_R0086 | - | 05 Gln tRNA |
| 4437479 | 4437555 | - | 77 | 150387853 | Amet_R0087 | - | 11 Arg tRNA |
| 4437564 | 4437637 | - | 74 | 150387853 | Amet_R0088 | - | 01 Gly tRNA |
| 4437646 | 4437721 | - | 76 | 150387853 | Amet_R0089 | - | 12 Thr tRNA |
| 4437735 | 4437811 | - | 77 | 150387853 | Amet_R0090 | - | 06 Asp tRNA |
| 4437937 | 4438012 | - | 76 | 150387853 | Amet_R0091 | - | 13 Val tRNA |
| 4438025 | 4438099 | - | 75 | 150387853 | Amet_R0092 | - | 04 Glu tRNA |
| 4438106 | 4438181 | - | 76 | 150387853 | Amet_R0093 | - | 16 Met tRNA |
| 4438249 | 4438364 | - | 116 | 150387853 | Amet_R0094 | - | 5S ribosomal RNA |
| 4438493 | 4441427 | - | 2935 | 150387853 | Amet_R0095 | - | 23S ribosomal RNA |
| 4441686 | 4443206 | - | 1521 | 150387853 | Amet_R0096 | - | 16S ribosomal RNA |
| 4444760 | 4444833 | - | 74 | 150387853 | Amet_R0097 | - | 01 Gly tRNA |
| 4444870 | 4444946 | - | 77 | 150387853 | Amet_R0098 | - | 16 Met tRNA |
| 4445030 | 4445105 | - | 76 | 150387853 | Amet_R0099 | - | 16 Met tRNA |
| 4445183 | 4445258 | - | 76 | 150387853 | Amet_R0100 | - | 17 Phe tRNA |
| 4445268 | 4445344 | - | 77 | 150387853 | Amet_R0101 | - | 14 Ile tRNA |
| 4445350 | 4445426 | - | 77 | 150387853 | Amet_R0102 | - | 03 Pro tRNA |
| 4445433 | 4445508 | - | 76 | 150387853 | Amet_R0103 | - | 20 Trp tRNA |
| 4445531 | 4445607 | - | 77 | 150387853 | Amet_R0104 | - | 16 Met tRNA |
| 4445622 | 4445698 | - | 77 | 150387853 | Amet_R0105 | - | 03 Pro tRNA |
| 4445708 | 4445799 | - | 92 | 150387853 | Amet_R0106 | - | 08 Ser tRNA |
| 4445814 | 4445902 | - | 89 | 150387853 | Amet_R0107 | - | 08 Ser tRNA |
| 4445911 | 4445986 | - | 76 | 150387853 | Amet_R0108 | - | 10 Lys tRNA |
| 4445991 | 4446065 | - | 75 | 150387853 | Amet_R0109 | - | 01 Gly tRNA |
| 4446093 | 4446175 | - | 83 | 150387853 | Amet_R0110 | - | 15 Leu tRNA |
| 4446260 | 4446344 | - | 85 | 150387853 | Amet_R0111 | - | 18 Tyr tRNA |
| 4446357 | 4446432 | - | 76 | 150387853 | Amet_R0112 | - | 12 Thr tRNA |
| 4446446 | 4446522 | - | 77 | 150387853 | Amet_R0113 | - | 06 Asp tRNA |
| 4446648 | 4446723 | - | 76 | 150387853 | Amet_R0114 | - | 13 Val tRNA |
| 4446736 | 4446810 | - | 75 | 150387853 | Amet_R0115 | - | 04 Glu tRNA |
| 4446817 | 4446892 | - | 76 | 150387853 | Amet_R0116 | - | 16 Met tRNA |
| 4446907 | 4446995 | - | 89 | 150387853 | Amet_R0117 | - | 15 Leu tRNA |
| 4447001 | 4447075 | - | 75 | 150387853 | Amet_R0118 | - | 07 Asn tRNA |
| 4447083 | 4447198 | - | 116 | 150387853 | Amet_R0119 | - | 5S ribosomal RNA |
| 4447380 | 4450314 | - | 2935 | 150387853 | Amet_R0120 | - | 23S ribosomal RNA |
| 4450484 | 4450559 | - | 76 | 150387853 | Amet_R0121 | - | 02 Ala tRNA |
| 4450628 | 4452148 | - | 1521 | 150387853 | Amet_R0122 | - | 16S ribosomal RNA |
| 4452537 | 4452612 | - | 76 | 150387853 | Amet_R0123 | - | 17 Phe tRNA |
| 4452622 | 4452698 | - | 77 | 150387853 | Amet_R0124 | - | 14 Ile tRNA |
| 4452703 | 4452778 | - | 76 | 150387853 | Amet_R0125 | - | 10 Lys tRNA |
| 4452783 | 4452858 | - | 76 | 150387853 | Amet_R0126 | - | 05 Gln tRNA |
| 4452865 | 4452941 | - | 77 | 150387853 | Amet_R0127 | - | 11 Arg tRNA |
| 4452950 | 4453023 | - | 74 | 150387853 | Amet_R0128 | - | 01 Gly tRNA |
| 4453032 | 4453107 | - | 76 | 150387853 | Amet_R0129 | - | 12 Thr tRNA |
| 4453241 | 4453316 | - | 76 | 150387853 | Amet_R0130 | - | 13 Val tRNA |
| 4453329 | 4453403 | - | 75 | 150387853 | Amet_R0131 | - | 04 Glu tRNA |
| 4453407 | 4453522 | - | 116 | 150387853 | Amet_R0132 | - | 5S ribosomal RNA |
| 4453686 | 4456620 | - | 2935 | 150387853 | Amet_R0133 | - | 23S ribosomal RNA |
| 4457012 | 4458532 | - | 1521 | 150387853 | Amet_R0134 | - | 16S ribosomal RNA |
| 4628340 | 4628455 | - | 116 | 150387853 | Amet_R0135 | - | 5S ribosomal RNA |
| 4628636 | 4631570 | - | 2935 | 150387853 | Amet_R0136 | - | 23S ribosomal RNA |
| 4631934 | 4633454 | - | 1521 | 150387853 | Amet_R0137 | - | 16S ribosomal RNA |
| 4894590 | 4894664 | - | 75 | 150387853 | Amet_R0138 | - | 04 Glu tRNA |
| 4894718 | 4894793 | - | 76 | 150387853 | Amet_R0139 | - | 10 Lys tRNA |