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   LOCUS       NC_009485            8264687 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Bradyrhizobium sp. BTAi1, complete genome.
   ACCESSION   NC_009485
   VERSION     NC_009485.1  GI:148251626
   KEYWORDS    .
   SOURCE      Bradyrhizobium sp. BTAi1
     ORGANISM  Bradyrhizobium sp. BTAi1
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Bradyrhizobium.
   REFERENCE   1  (bases 1 to 8264687)
     AUTHORS   Giraud,E., Moulin,L., Vallenet,D., Barbe,V., Cytrin,E.,
               Avarre,J.-C., Jaubert,M., Simon,D., Cartieaux,F., Prin,Y., Bena,G.,
               Hannibal,L., Fardoux,J., Kojadinovic,M., Vuillet,L., Lajus,A.,
               Cruveiller,S., Rouy,Z., Mangenot,S., Segurens,B., Dossat,C.,
               Franck,W.L., Chang,W.-S., Saunders,E., Bruce,D., Richardson,P.,
               Normand,P., Dreyfus,B., Pignol,D., Stacey,G., Emerich,D.,
               Vermeglio,A., Medigue,C. and Sadowsky,M.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Rhizobial Nod Factors are not Universally Required for Legume
               Nodulation
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 8264687)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 8264687)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Saunders,E., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000494.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000390
               Source DNA and bacteria available from Michael Sadowsky
               (sadowsky@umn.edu)
               Bacteria available from ATCC: ATCC BAA-1182
               Contacts: Eric Giraud (giraud@mpl.ird.fr)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[]

Начало Конец Направление Длина PID Ген COG Комментарий
112686 112761 + 76 148251626 BBta_tRNA1 - 02 Ala tRNA
230495 230581 + 87 148251626 BBta_tRNA2 - 15 Leu tRNA
276743 276818 + 76 148251626 BBta_tRNA3 - 02 Ala tRNA
289648 289723 - 76 148251626 BBta_tRNA52 - 12 Thr tRNA
310428 310502 + 75 148251626 BBta_tRNA4 - 01 Gly tRNA
432947 433036 + 90 148251626 BBta_tRNA5 - 08 Ser tRNA
587810 587899 + 90 148251626 BBta_tRNA6 - 08 Ser tRNA
758361 758463 + 103 148251626 BBta_miscRNA9 - ykkC-yxkD
799661 799734 + 74 148251626 BBta_tRNA7 - 01 Gly tRNA
927889 927963 - 75 148251626 BBta_tRNA51 - 12 Thr tRNA
935782 935857 + 76 148251626 BBta_tRNA8 - 17 Phe tRNA
1169214 1169298 - 85 148251626 BBta_tRNA50 - 15 Leu tRNA
1273684 1275176 + 1493 148251626 BBta_rRNA16S1 - 16S ribosomal RNA
1275407 1275483 + 77 148251626 BBta_tRNA9 - 14 Ile tRNA
1275627 1275702 + 76 148251626 BBta_tRNA10 - 02 Ala tRNA
1276223 1279081 + 2859 148251626 BBta_rRNA23S1 - 23S ribosomal RNA
1279178 1279300 + 123 148251626 BBta_rRNA5S1 - 5S ribosomal RNA
1294885 1294961 + 77 148251626 BBta_tRNA11 - 16 Met tRNA
1326564 1326631 + 68 148251626 BBta_tRNA12 - Xaa tRNA
1490439 1490513 + 75 148251626 BBta_tRNA13 - 13 Val tRNA
1817692 1817887 + 196 148251626 BBta_miscRNA13 - RFN
1951990 1952066 + 77 148251626 BBta_tRNA14 - 16 Met tRNA
2477299 2477375 + 77 148251626 BBta_tRNA15 - 03 Pro tRNA
2583194 2583268 + 75 148251626 BBta_tRNA16 - 05 Gln tRNA
3290341 3290534 + 194 148251626 BBta_miscRNA3 - Cobalamin
3360485 3361977 + 1493 148251626 BBta_rRNA16S2 - 16S ribosomal RNA
3362208 3362284 + 77 148251626 BBta_tRNA17 - 14 Ile tRNA
3362428 3362503 + 76 148251626 BBta_tRNA18 - 02 Ala tRNA
3363025 3365883 + 2859 148251626 BBta_rRNA23S2 - 23S ribosomal RNA
3365979 3366101 + 123 148251626 BBta_rRNA5S2 - 5S ribosomal RNA
3688227 3688300 - 74 148251626 BBta_tRNA49 - 05 Gln tRNA
3926502 3926576 - 75 148251626 BBta_tRNA48 - 07 Asn tRNA
3926738 3926805 - 68 148251626 BBta_tRNA47 - Xaa tRNA
4096130 4096206 - 77 148251626 BBta_tRNA46 - 11 Arg tRNA
4131171 4131244 - 74 148251626 BBta_tRNA45 - 19 Cys tRNA
4137741 4137815 - 75 148251626 BBta_tRNA44 - 07 Asn tRNA
4231469 4231543 + 75 148251626 BBta_tRNA19 - 04 Glu tRNA
4237965 4238041 + 77 148251626 BBta_tRNA20 - 03 Pro tRNA
4309469 4309558 + 90 148251626 BBta_tRNA21 - 08 Ser tRNA
4388572 4388647 + 76 148251626 BBta_tRNA22 - 10 Lys tRNA
4783759 4783835 - 77 148251626 BBta_tRNA43 - 06 Asp tRNA
4788896 4788972 - 77 148251626 BBta_tRNA42 - 13 Val tRNA
4796151 4796235 - 85 148251626 BBta_tRNA41 - 15 Leu tRNA
4837721 4837795 - 75 148251626 BBta_miscRNA12 - intron gpII
4855404 4855481 - 78 148251626 BBta_tRNA40 - 03 Pro tRNA
4931548 4931641 + 94 148251626 BBta_tRNA23 - 08 Ser tRNA
5130994 5131078 - 85 148251626 BBta_tRNA39 - 15 Leu tRNA
5191948 5192024 + 77 148251626 BBta_tRNA24 - 11 Arg tRNA
5321726 5321801 - 76 148251626 BBta_tRNA38 - 20 Trp tRNA
5356462 5356535 - 74 148251626 BBta_tRNA37 - 01 Gly tRNA
5389264 5389349 - 86 148251626 BBta_tRNA36 - 18 Tyr tRNA
5392519 5392593 + 75 148251626 BBta_tRNA25 - 12 Thr tRNA
5463122 5463208 + 87 148251626 BBta_tRNA26 - 15 Leu tRNA
5669954 5670060 + 107 148251626 BBta_miscRNA5 - gcvT
5670064 5670154 + 91 148251626 BBta_miscRNA6 - gcvT
6260705 6260780 - 76 148251626 BBta_tRNA35 - 10 Lys tRNA
6303139 6303357 + 219 148251626 BBta_miscRNA4 - Cobalamin
6305642 6305856 + 215 148251626 BBta_miscRNA2 - Cobalamin
6425386 6425750 + 365 148251626 BBta_miscRNA10 - RNaseP
6469822 6469918 + 97 148251626 BBta_miscRNA14 - THI
6615111 6615186 + 76 148251626 BBta_tRNA27 - 16 Met tRNA
6816299 6816372 - 74 148251626 BBta_miscRNA11 - intron gpII
6851026 6851100 + 75 148251626 BBta_tRNA28 - 13 Val tRNA
7041924 7041998 - 75 148251626 BBta_tRNA34 - 04 Glu tRNA
7078602 7078678 + 77 148251626 BBta_tRNA29 - Xaa tRNA
7140318 7140394 - 77 148251626 BBta_tRNA33 - 09 His tRNA
7688219 7688295 - 77 148251626 BBta_tRNA32 - 11 Arg tRNA
7712066 7712163 - 98 148251626 BBta_miscRNA1 - SRP
7904972 7905048 - 77 148251626 BBta_tRNA31 - 11 Arg tRNA
8089157 8089233 + 77 148251626 BBta_tRNA30 - 11 Arg tRNA
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