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   LOCUS       NC_009439            5072807 bp    DNA     circular BCT 25-JUN-2007
   DEFINITION  Pseudomonas mendocina ymp, complete genome.
   ACCESSION   NC_009439
   VERSION     NC_009439.1  GI:146305042
   KEYWORDS    .
   SOURCE      Pseudomonas mendocina ymp
     ORGANISM  Pseudomonas mendocina ymp
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 5072807)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C.,
               Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Hersman,L., Dubois,J., Maurice,P. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Pseudomonas mendocina ymp
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5072807)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (08-MAY-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5072807)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Detter,J.C.,
               Bruce,D., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N., Hersman,L., Dubois,J., Maurice,P. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (17-APR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000680.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002766
               Source DNA and bacteria available from Larry Hersman
               (hersman@lanl.gov)
               Contacts: Larry Hersman (hersman@lanl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
237323 237399 - 77 146305042 Pmen_R0001 - 11 Arg tRNA
711349 711435 - 87 146305042 Pmen_R0002 - 15 Leu tRNA
711518 711604 - 87 146305042 Pmen_R0003 - 15 Leu tRNA
863123 863198 + 76 146305042 Pmen_R0004 - 07 Asn tRNA
863208 863284 + 77 146305042 Pmen_R0005 - 03 Pro tRNA
863291 863366 + 76 146305042 Pmen_R0006 - 10 Lys tRNA
1031264 1031557 + 294 146305042 Pmen_R0007 - bacterial RNase P
1141980 1143527 + 1548 146305042 Pmen_R0008 - 16S ribosomal RNA
1143601 1143677 + 77 146305042 Pmen_R0009 - 14 Ile tRNA
1143700 1143775 + 76 146305042 Pmen_R0010 - 02 Ala tRNA
1144029 1146931 + 2903 146305042 Pmen_R0011 - 23S ribosomal RNA
1147079 1147198 + 120 146305042 Pmen_R0012 - 5S ribosomal RNA
1180764 1180840 + 77 146305042 Pmen_R0013 - 16 Met tRNA
1193458 1193532 - 75 146305042 Pmen_R0014 - 05 Gln tRNA
1193589 1193663 - 75 146305042 Pmen_R0015 - 05 Gln tRNA
1340826 1341179 - 354 146305042 Pmen_R0016 - tmRNA
1349585 1349657 - 73 146305042 Pmen_R0017 - Xaa tRNA
1349656 1349728 - 73 146305042 Pmen_R0018 - Xaa tRNA
1440964 1441039 + 76 146305042 Pmen_R0019 - 10 Lys tRNA
1474256 1474331 + 76 146305042 Pmen_R0020 - 13 Val tRNA
1474347 1474423 + 77 146305042 Pmen_R0021 - 06 Asp tRNA
1515345 1515418 - 74 146305042 Pmen_R0022 - 01 Gly tRNA
1827719 1827808 + 90 146305042 Pmen_R0023 - 08 Ser tRNA
1887040 1887116 - 77 146305042 Pmen_R0024 - 16 Met tRNA
1887232 1887308 - 77 146305042 Pmen_R0025 - 16 Met tRNA
1919791 1919867 - 77 146305042 Pmen_R0026 - 03 Pro tRNA
2072254 2072329 - 76 146305042 Pmen_R0027 - 07 Asn tRNA
2107158 2107233 + 76 146305042 Pmen_R0028 - 04 Glu tRNA
2107249 2107324 + 76 146305042 Pmen_R0029 - 01 Gly tRNA
2107370 2107445 + 76 146305042 Pmen_R0030 - 04 Glu tRNA
2107460 2107535 + 76 146305042 Pmen_R0031 - 01 Gly tRNA
2175065 2175141 + 77 146305042 Pmen_R0032 - 13 Val tRNA
2182775 2182851 + 77 146305042 Pmen_R0033 - 03 Pro tRNA
2193257 2194804 + 1548 146305042 Pmen_R0034 - 16S ribosomal RNA
2194878 2194954 + 77 146305042 Pmen_R0035 - 14 Ile tRNA
2194977 2195052 + 76 146305042 Pmen_R0036 - 02 Ala tRNA
2195306 2198208 + 2903 146305042 Pmen_R0037 - 23S ribosomal RNA
2198356 2198475 + 120 146305042 Pmen_R0038 - 5S ribosomal RNA
2264335 2264411 + 77 146305042 Pmen_R0039 - 11 Arg tRNA
2264450 2264525 + 76 146305042 Pmen_R0040 - 09 His tRNA
2264581 2264665 + 85 146305042 Pmen_R0041 - 15 Leu tRNA
2338212 2338301 + 90 146305042 Pmen_R0042 - 08 Ser tRNA
2620607 2620693 - 87 146305042 Pmen_R0043 - 15 Leu tRNA
2620814 2620887 - 74 146305042 Pmen_R0044 - 19 Cys tRNA
2620926 2621001 - 76 146305042 Pmen_R0045 - 01 Gly tRNA
2624297 2624384 - 88 146305042 Pmen_R0046 - 08 Ser tRNA
2905983 2906100 - 118 146305042 Pmen_R0047 - SRP RNA; RNA component of signal recognition particle
2998829 2998904 - 76 146305042 Pmen_R0048 - 04 Glu tRNA
2998953 2999028 - 76 146305042 Pmen_R0049 - 02 Ala tRNA
2999076 2999151 - 76 146305042 Pmen_R0050 - 04 Glu tRNA
2999200 2999275 - 76 146305042 Pmen_R0051 - 02 Ala tRNA
2999325 2999400 - 76 146305042 Pmen_R0052 - 04 Glu tRNA
2999461 2999536 - 76 146305042 Pmen_R0053 - 02 Ala tRNA
3182441 3182515 - 75 146305042 Pmen_R0054 - 11 Arg tRNA
3209444 3209520 - 77 146305042 Pmen_R0055 - 11 Arg tRNA
3209591 3209667 - 77 146305042 Pmen_R0056 - 11 Arg tRNA
3209712 3209788 - 77 146305042 Pmen_R0057 - 11 Arg tRNA
3209860 3209950 - 91 146305042 Pmen_R0058 - 08 Ser tRNA
3276658 3276734 - 77 146305042 Pmen_R0059 - 06 Asp tRNA
3276835 3276911 - 77 146305042 Pmen_R0060 - 06 Asp tRNA
3276944 3277019 - 76 146305042 Pmen_R0061 - 13 Val tRNA
3523269 3523344 - 76 146305042 Pmen_R0062 - 12 Thr tRNA
3882267 3882351 + 85 146305042 Pmen_R0063 - 15 Leu tRNA
3984674 3984750 - 77 146305042 Pmen_R0064 - 16 Met tRNA
3984848 3984933 - 86 146305042 Pmen_R0065 - 15 Leu tRNA
4303533 4303608 - 76 146305042 Pmen_R0066 - 20 Trp tRNA
4304940 4305015 - 76 146305042 Pmen_R0067 - 12 Thr tRNA
4305042 4305115 - 74 146305042 Pmen_R0068 - 01 Gly tRNA
4305140 4305224 - 85 146305042 Pmen_R0069 - 18 Tyr tRNA
4308086 4308200 - 115 146305042 Pmen_R0070 - 5S ribosomal RNA
4308352 4311256 - 2905 146305042 Pmen_R0071 - 23S ribosomal RNA
4311508 4311583 - 76 146305042 Pmen_R0072 - 02 Ala tRNA
4311606 4311682 - 77 146305042 Pmen_R0073 - 14 Ile tRNA
4311767 4313303 - 1537 146305042 Pmen_R0074 - 16S ribosomal RNA
4410691 4410767 + 77 146305042 Pmen_R0075 - 16 Met tRNA
4664813 4664888 + 76 146305042 Pmen_R0076 - 17 Phe tRNA
4677750 4677825 + 76 146305042 Pmen_R0077 - 12 Thr tRNA
4849314 4849428 - 115 146305042 Pmen_R0078 - 5S ribosomal RNA
4849579 4852483 - 2905 146305042 Pmen_R0079 - 23S ribosomal RNA
4852735 4852810 - 76 146305042 Pmen_R0080 - 02 Ala tRNA
4852833 4852909 - 77 146305042 Pmen_R0081 - 14 Ile tRNA
4852994 4854530 - 1537 146305042 Pmen_R0082 - 16S ribosomal RNA
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