LOCUS NC_009379 2159490 bp DNA circular BCT 21-JUN-2007
DEFINITION Polynucleobacter sp. QLW-P1DMWA-1, complete genome.
ACCESSION NC_009379
VERSION NC_009379.1 GI:145588189
KEYWORDS .
SOURCE Polynucleobacter sp. QLW-P1DMWA-1
ORGANISM Polynucleobacter sp. QLW-P1DMWA-1
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Burkholderiaceae; Polynucleobacter.
REFERENCE 1 (bases 1 to 2159490)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Meincke,L., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Mikhailova,N., Poeckl,M., Wu,Q.L., Hahn,M. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Complete sequence of Polynucleobacter sp. QLW-P1DMWA-1
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2159490)
AUTHORS Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
Dalin,E., Tice,H., Pitluck,S., Meincke,L., Brettin,T., Bruce,D.,
Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
Kyrpides,N., Mikhailova,N., Poeckl,M., Wu,Q.L., Hahn,M. and
Richardson,P.
CONSRTM US DOE Joint Genome Institute
TITLE Direct Submission
JOURNAL Submitted (09-APR-2007) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFERENCE 3 (bases 1 to 2159490)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (01-AUG-2000) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000655.
URL -- http://www.jgi.doe.gov
JGI Project ID: 4001734
Source DNA and bacteria available from Martin Hahn
(martin.hahn@oeaw.ac.at)
Contacts: Martin Hahn (martin.hahn@oeaw.ac.at)
Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated to close all gaps with
greater than 98% coverage of at least two independent clones. Each
base pair has a minimum q (quality) value of 30 and the total error
rate is less than one per 50000.
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them. It is our intention to publish the work of this
project in a timely fashion and we welcome collaborative
interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 32310 | 32385 | - | 76 | 145588189 | Pnuc_R0001 | - | 11 Arg tRNA |
| 36826 | 38361 | + | 1536 | 145588189 | Pnuc_R0002 | - | 16S ribosomal RNA |
| 38418 | 38494 | + | 77 | 145588189 | Pnuc_R0003 | - | 14 Ile tRNA |
| 38525 | 38600 | + | 76 | 145588189 | Pnuc_R0004 | - | 02 Ala tRNA |
| 38869 | 41743 | + | 2875 | 145588189 | Pnuc_R0005 | - | 23S ribosomal RNA |
| 41846 | 41963 | + | 118 | 145588189 | Pnuc_R0006 | - | 5S ribosomal RNA |
| 42067 | 42151 | + | 85 | 145588189 | Pnuc_R0007 | - | 18 Tyr tRNA |
| 42157 | 42230 | + | 74 | 145588189 | Pnuc_R0008 | - | 01 Gly tRNA |
| 42251 | 42325 | + | 75 | 145588189 | Pnuc_R0009 | - | 12 Thr tRNA |
| 43590 | 43665 | + | 76 | 145588189 | Pnuc_R0010 | - | 20 Trp tRNA |
| 123899 | 123974 | + | 76 | 145588189 | Pnuc_R0011 | - | 12 Thr tRNA |
| 407922 | 407997 | + | 76 | 145588189 | Pnuc_R0012 | - | 01 Gly tRNA |
| 408047 | 408120 | + | 74 | 145588189 | Pnuc_R0013 | - | 19 Cys tRNA |
| 480244 | 480599 | - | 356 | 145588189 | Pnuc_R0014 | - | tmRNA |
| 580448 | 580523 | - | 76 | 145588189 | Pnuc_R0015 | - | 10 Lys tRNA |
| 607870 | 607954 | + | 85 | 145588189 | Pnuc_R0016 | - | 15 Leu tRNA |
| 670849 | 670924 | + | 76 | 145588189 | Pnuc_R0017 | - | 12 Thr tRNA |
| 693706 | 693795 | + | 90 | 145588189 | Pnuc_R0018 | - | 08 Ser tRNA |
| 700011 | 700115 | - | 105 | 145588189 | Pnuc_R0019 | - | SRP RNA; RNA component of signal recognition particle |
| 823230 | 823306 | + | 77 | 145588189 | Pnuc_R0020 | - | 13 Val tRNA |
| 830898 | 830974 | + | 77 | 145588189 | Pnuc_R0021 | - | 03 Pro tRNA |
| 857068 | 857162 | + | 95 | 145588189 | Pnuc_R0022 | - | 08 Ser tRNA |
| 881871 | 881946 | - | 76 | 145588189 | Pnuc_R0023 | - | 07 Asn tRNA |
| 890000 | 890074 | - | 75 | 145588189 | Pnuc_R0024 | - | 11 Arg tRNA |
| 930035 | 930121 | + | 87 | 145588189 | Pnuc_R0025 | - | 15 Leu tRNA |
| 936306 | 936381 | + | 76 | 145588189 | Pnuc_R0026 | - | 13 Val tRNA |
| 954419 | 954494 | + | 76 | 145588189 | Pnuc_R0027 | - | 02 Ala tRNA |
| 954529 | 954604 | + | 76 | 145588189 | Pnuc_R0028 | - | 04 Glu tRNA |
| 954655 | 954731 | + | 77 | 145588189 | Pnuc_R0029 | - | 06 Asp tRNA |
| 1005961 | 1006037 | - | 77 | 145588189 | Pnuc_R0030 | - | 11 Arg tRNA |
| 1006074 | 1006150 | - | 77 | 145588189 | Pnuc_R0031 | - | 03 Pro tRNA |
| 1055841 | 1055925 | - | 85 | 145588189 | Pnuc_R0032 | - | 15 Leu tRNA |
| 1078788 | 1078864 | - | 77 | 145588189 | Pnuc_R0033 | - | 11 Arg tRNA |
| 1096230 | 1096319 | - | 90 | 145588189 | Pnuc_R0034 | - | 08 Ser tRNA |
| 1186934 | 1187024 | - | 91 | 145588189 | Pnuc_R0035 | - | 08 Ser tRNA |
| 1204350 | 1204438 | - | 89 | 145588189 | Pnuc_R0036 | - | 15 Leu tRNA |
| 1235221 | 1235296 | - | 76 | 145588189 | Pnuc_R0037 | - | 09 His tRNA |
| 1342971 | 1343057 | + | 87 | 145588189 | Pnuc_R0038 | - | 15 Leu tRNA |
| 1540411 | 1540487 | + | 77 | 145588189 | Pnuc_R0039 | - | 16 Met tRNA |
| 1719678 | 1719752 | + | 75 | 145588189 | Pnuc_R0040 | - | 19 Cys tRNA |
| 1923798 | 1923874 | - | 77 | 145588189 | Pnuc_R0041 | - | 16 Met tRNA |
| 1962324 | 1962576 | - | 253 | 145588189 | Pnuc_R0042 | - | RNase P |
| 1999091 | 1999167 | + | 77 | 145588189 | Pnuc_R0043 | - | 05 Gln tRNA |
| 2139906 | 2139981 | - | 76 | 145588189 | Pnuc_R0044 | - | 17 Phe tRNA |