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   LOCUS       NC_008740            4326849 bp    DNA     circular BCT 03-JAN-2007
   DEFINITION  Marinobacter aquaeolei VT8, complete genome.
   ACCESSION   NC_008740
   VERSION     NC_008740.1  GI:120552944
   KEYWORDS    .
   SOURCE      Marinobacter aquaeolei VT8
     ORGANISM  Marinobacter aquaeolei VT8
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Alteromonadaceae; Marinobacter.
   REFERENCE   1  (bases 1 to 4326849)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Edwards,K. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Marinobacter aquaeolei VT8
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4326849)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (03-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4326849)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Edwards,K. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (15-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000514.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3640420
               Source DNA and bacteria available from Katrina Edwards
               (katrina@whoi.edu)
               Contacts: Katrina Edwards (katrina@whoi.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
56383 56459 - 77 120552944 Maqu_R0001 - 03 Pro tRNA
150110 150183 + 74 120552944 Maqu_R0003 - 01 Gly tRNA
510275 510351 - 77 120552944 Maqu_R0004 - 11 Arg tRNA
756777 756853 - 77 120552944 Maqu_R0005 - 16 Met tRNA
798762 800294 + 1533 120552944 Maqu_R0006 - 16S ribosomal RNA
800385 800461 + 77 120552944 Maqu_R0007 - 14 Ile tRNA
800558 800633 + 76 120552944 Maqu_R0008 - 02 Ala tRNA
800946 803845 + 2900 120552944 Maqu_R0009 - 23S ribosomal RNA
803936 804050 + 115 120552944 Maqu_R0010 - 5S ribosomal RNA
812163 812238 + 76 120552944 Maqu_R0011 - 12 Thr tRNA
812279 812362 + 84 120552944 Maqu_R0012 - 18 Tyr tRNA
812373 812447 + 75 120552944 Maqu_R0013 - 01 Gly tRNA
812461 812536 + 76 120552944 Maqu_R0014 - 12 Thr tRNA
813831 813906 + 76 120552944 Maqu_R0015 - 20 Trp tRNA
1010143 1011675 + 1533 120552944 Maqu_R0016 - 16S ribosomal RNA
1011766 1011842 + 77 120552944 Maqu_R0017 - 14 Ile tRNA
1011939 1012014 + 76 120552944 Maqu_R0018 - 02 Ala tRNA
1012327 1015226 + 2900 120552944 Maqu_R0019 - 23S ribosomal RNA
1015317 1015431 + 115 120552944 Maqu_R0020 - 5S ribosomal RNA
1102583 1102672 + 90 120552944 Maqu_R0021 - 08 Ser tRNA
1102728 1102804 + 77 120552944 Maqu_R0022 - 11 Arg tRNA
1102825 1102901 + 77 120552944 Maqu_R0023 - 11 Arg tRNA
1179960 1180035 - 76 120552944 Maqu_R0024 - 07 Asn tRNA
1194480 1194555 - 76 120552944 Maqu_R0025 - 07 Asn tRNA
1264200 1264286 + 87 120552944 Maqu_R0026 - 15 Leu tRNA
1289988 1290063 - 76 120552944 Maqu_R0027 - 04 Glu tRNA
1293119 1293194 + 76 120552944 Maqu_R0028 - 01 Gly tRNA
1346647 1346737 + 91 120552944 Maqu_R0029 - 08 Ser tRNA
1364693 1364768 + 76 120552944 Maqu_R0030 - 01 Gly tRNA
1364826 1364899 + 74 120552944 Maqu_R0031 - 19 Cys tRNA
1387007 1387082 + 76 120552944 Maqu_R0032 - 10 Lys tRNA
1646427 1646513 - 87 120552944 Maqu_R0033 - 15 Leu tRNA
1697255 1697345 - 91 120552944 Maqu_R0034 - 08 Ser tRNA
1808165 1808281 - 117 120552944 Maqu_R0035 - SRP RNA; RNA component of signal recognition particle
1890385 1890461 + 77 120552944 Maqu_R0036 - 13 Val tRNA
1902341 1902416 - 76 120552944 Maqu_R0037 - 10 Lys tRNA
1902479 1902554 - 76 120552944 Maqu_R0038 - 10 Lys tRNA
2054975 2055059 - 85 120552944 Maqu_R0039 - 15 Leu tRNA
2055125 2055200 - 76 120552944 Maqu_R0040 - 09 His tRNA
2055289 2055365 - 77 120552944 Maqu_R0041 - 11 Arg tRNA
2055398 2055474 - 77 120552944 Maqu_R0042 - 03 Pro tRNA
2108604 2108679 - 76 120552944 Maqu_R0043 - 04 Glu tRNA
2108687 2108762 - 76 120552944 Maqu_R0044 - 02 Ala tRNA
2245808 2245884 - 77 120552944 Maqu_R0045 - 16 Met tRNA
2249039 2249114 - 76 120552944 Maqu_R0046 - 13 Val tRNA
2249124 2249200 - 77 120552944 Maqu_R0047 - 06 Asp tRNA
2249243 2249318 - 76 120552944 Maqu_R0048 - 13 Val tRNA
2284543 2284619 + 77 120552944 Maqu_R0049 - 03 Pro tRNA
2321701 2321777 - 77 120552944 Maqu_R0050 - 06 Asp tRNA
2642057 2642131 + 75 120552944 Maqu_R0051 - 05 Gln tRNA
2645817 2645893 + 77 120552944 Maqu_R0052 - 16 Met tRNA
2667985 2668071 + 87 120552944 Maqu_R0053 - 15 Leu tRNA
2749391 2749688 - 298 120552944 Maqu_R0054 - rnpB RNA
2764145 2764259 - 115 120552944 Maqu_R0055 - 5S ribosomal RNA
2764350 2767249 - 2900 120552944 Maqu_R0056 - 23S ribosomal RNA
2767562 2767637 - 76 120552944 Maqu_R0057 - 02 Ala tRNA
2767860 2767936 - 77 120552944 Maqu_R0058 - 14 Ile tRNA
2768183 2769715 - 1533 120552944 Maqu_R0059 - 16S ribosomal RNA
2810170 2810246 + 77 120552944 Maqu_R0060 - 11 Arg tRNA
2836249 2836325 - 77 120552944 Maqu_R0061 - 16 Met tRNA
3518381 3518456 + 76 120552944 Maqu_R0062 - 17 Phe tRNA
3706599 3706683 - 85 120552944 Maqu_R0063 - 15 Leu tRNA
3730537 3730899 + 363 120552944 Maqu_R0064 -
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