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   LOCUS       NC_008699            4985871 bp    DNA     circular BCT 21-DEC-2006
   DEFINITION  Nocardioides sp. JS614, complete genome.
   ACCESSION   NC_008699
   VERSION     NC_008699.1  GI:119714272
   KEYWORDS    .
   SOURCE      Nocardioides sp. JS614
     ORGANISM  Nocardioides sp. JS614
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Propionibacterineae; Nocardioidaceae; Nocardioides.
   REFERENCE   1  (bases 1 to 4985871)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T.,
               Gossett,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Nocardioides sp. JS614
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4985871)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4985871)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Mattes,T.,
               Gossett,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000509.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634503
               Source DNA and bacteria available from James Gossett
               (jmg18@cornell.edu)
               Contacts: James Gossett (jmg18@cornell.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
11935 12008 + 74 119714272 Noca_R0001 - 14 Ile tRNA
12276 12351 + 76 119714272 Noca_R0002 - 02 Ala tRNA
32617 32700 + 84 119714272 Noca_R0003 - 15 Leu tRNA
196527 196614 - 88 119714272 Noca_R0004 - 08 Ser tRNA
197696 197788 + 93 119714272 Noca_R0005 - 08 Ser tRNA
202663 202735 + 73 119714272 Noca_R0006 - 11 Arg tRNA
303375 303464 + 90 119714272 Noca_R0007 - 08 Ser tRNA
339643 339731 - 89 119714272 Noca_R0008 - 08 Ser tRNA
339855 339945 + 91 119714272 Noca_R0009 - SRP RNA; RNA component of signal recognition particle
347117 347193 - 77 119714272 Noca_R0010 - 03 Pro tRNA
425150 425225 + 76 119714272 Noca_R0011 - 12 Thr tRNA
595077 595158 + 82 119714272 Noca_R0012 - 18 Tyr tRNA
709261 709333 + 73 119714272 Noca_R0013 - 12 Thr tRNA
709389 709462 + 74 119714272 Noca_R0014 - 16 Met tRNA
733698 733773 + 76 119714272 Noca_R0015 - 20 Trp tRNA
827249 827324 - 76 119714272 Noca_R0016 - 11 Arg tRNA
838947 839022 + 76 119714272 Noca_R0017 - 02 Ala tRNA
950002 950080 + 79 119714272 Noca_R0018 - 05 Gln tRNA
981354 981430 + 77 119714272 Noca_R0019 - 15 Leu tRNA
1348591 1348958 + 368 119714272 Noca_R0021 -
1396961 1397045 - 85 119714272 Noca_R0022 - 15 Leu tRNA
1410376 1410451 - 76 119714272 Noca_R0023 - 10 Lys tRNA
1428940 1429015 - 76 119714272 Noca_R0024 - 09 His tRNA
1436447 1436523 - 77 119714272 Noca_R0025 - 11 Arg tRNA
1625605 1625681 + 77 119714272 Noca_R0026 - 16 Met tRNA
1693513 1693597 + 85 119714272 Noca_R0027 - 16 Met tRNA
1850749 1850821 - 73 119714272 Noca_R0028 - 11 Arg tRNA
1942709 1942784 + 76 119714272 Noca_R0029 - 02 Ala tRNA
2081097 2081169 + 73 119714272 Noca_R0030 - 07 Asn tRNA
2095934 2096010 + 77 119714272 Noca_R0031 - 16 Met tRNA
2113497 2115016 + 1520 119714272 Noca_R0032 - 16S ribosomal RNA
2115459 2118586 + 3128 119714272 Noca_R0033 - 23S ribosomal RNA
2118714 2118830 + 117 119714272 Noca_R0034 - 5S ribosomal RNA
2136462 2136536 + 75 119714272 Noca_R0035 - 13 Val tRNA
2178789 2179125 - 337 119714272 Noca_R0036 - rnpB RNA
2523391 2523465 - 75 119714272 Noca_R0037 - 13 Val tRNA
2523490 2523563 - 74 119714272 Noca_R0038 - 19 Cys tRNA
2523595 2523667 - 73 119714272 Noca_R0039 - 01 Gly tRNA
2525215 2525289 + 75 119714272 Noca_R0040 - 13 Val tRNA
2638556 2640075 + 1520 119714272 Noca_R0041 - 16S ribosomal RNA
2640518 2643645 + 3128 119714272 Noca_R0042 - 23S ribosomal RNA
2643773 2643889 + 117 119714272 Noca_R0043 - 5S ribosomal RNA
2671978 2672054 + 77 119714272 Noca_R0044 - 03 Pro tRNA
2788065 2788153 - 89 119714272 Noca_R0045 - 15 Leu tRNA
3215698 3215771 + 74 119714272 Noca_R0046 - 15 Leu tRNA
3539648 3539723 - 76 119714272 Noca_R0048 - 04 Glu tRNA
3539813 3539887 - 75 119714272 Noca_R0049 - 05 Gln tRNA
3690972 3691044 - 73 119714272 Noca_R0050 - 03 Pro tRNA
3691089 3691162 - 74 119714272 Noca_R0051 - 01 Gly tRNA
4231439 4231514 - 76 119714272 Noca_R0053 - 12 Thr tRNA
4514690 4514765 + 76 119714272 Noca_R0054 - 10 Lys tRNA
4533618 4533694 - 77 119714272 Noca_R0055 - 06 Asp tRNA
4533809 4533884 - 76 119714272 Noca_R0056 - 04 Glu tRNA
4534026 4534102 + 77 119714272 Noca_R0057 - 17 Phe tRNA
4668644 4668719 + 76 119714272 Noca_R0058 - 01 Gly tRNA
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