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   LOCUS       NC_008526            2895264 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Lactobacillus casei ATCC 334, complete genome.
   ACCESSION   NC_008526
   VERSION     NC_008526.1  GI:116493574
   KEYWORDS    .
   SOURCE      Lactobacillus casei ATCC 334
     ORGANISM  Lactobacillus casei ATCC 334
               Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae;
               Lactobacillus.
   REFERENCE   1  (bases 1 to 2895264)
     AUTHORS   Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
               Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
               Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
               Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
               Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
               Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
               Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
               Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
               Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
               Kozyavkin,S., Weimer,B. and Mills,D.
     TITLE     Comparative genomics of the lactic acid bacteria
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
      PUBMED   17030793
   REFERENCE   2  (bases 1 to 2895264)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-OCT-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2895264)
     AUTHORS   Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
               Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
               Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
               Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
               Genome Consortium and Fidelity Systems Inc.
     TITLE     Direct Submission
     JOURNAL   Submitted (23-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000423.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2662185
               Source DNA and bacteria available from Jeffery R. Broadbent
               (broadbnt@cc.usu.edu)
               Bacteria also available from ATCC: ATCC 334
               Contacts: Jeffery R. Broadbent (broadbnt@cc.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by Kira Makarova and Eugene Koonin
               Finishing done by Fidelity Systems Inc. (Gaithersburg)
               URL -- http://www.fidelitysystems.com  Project Information
               available at: http://genome.jgi-psf.org/mic_home.html
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
259505 261078 + 1574 116493574 LSEI_r0258 - 16S ribosomal RNA
261295 264214 + 2920 116493574 LSEI_r0259 - 23S ribosomal RNA
264412 264531 + 120 116493574 LSEI_r0260 - 5S ribosomal RNA
501060 501131 + 72 116493574 LSEI_t0485 - 11 Arg tRNA
722753 722825 - 73 116493574 LSEI_t0719 - 02 Ala tRNA
722847 722919 - 73 116493574 LSEI_t0720 - 02 Ala tRNA
823774 825347 + 1574 116493574 LSEI_r0829 - 16S ribosomal RNA
825564 828483 + 2920 116493574 LSEI_r0830 - 23S ribosomal RNA
828679 828798 + 120 116493574 LSEI_r0831 - 5S ribosomal RNA
828803 828875 + 73 116493574 LSEI_t0832 - 13 Val tRNA
828878 828950 + 73 116493574 LSEI_t0833 - 10 Lys tRNA
828992 829064 + 73 116493574 LSEI_t0834 - 12 Thr tRNA
829098 829169 + 72 116493574 LSEI_t0835 - 01 Gly tRNA
829230 829303 + 74 116493574 LSEI_t0836 - 11 Arg tRNA
829308 829381 + 74 116493574 LSEI_t0837 - 03 Pro tRNA
829408 829481 + 74 116493574 LSEI_t0838 - 16 Met tRNA
829490 829563 + 74 116493574 LSEI_t0839 - 16 Met tRNA
829612 829685 + 74 116493574 LSEI_t0840 - 16 Met tRNA
829693 829766 + 74 116493574 LSEI_t0841 - 06 Asp tRNA
829772 829844 + 73 116493574 LSEI_t0842 - 17 Phe tRNA
829864 829934 + 71 116493574 LSEI_t0843 - 01 Gly tRNA
829949 830022 + 74 116493574 LSEI_t0844 - 14 Ile tRNA
830052 830139 + 88 116493574 LSEI_t0845 - 08 Ser tRNA
830144 830215 + 72 116493574 LSEI_t0846 - 04 Glu tRNA
830225 830316 + 92 116493574 LSEI_t0847 - 08 Ser tRNA
830327 830400 + 74 116493574 LSEI_t0848 - 16 Met tRNA
830408 830481 + 74 116493574 LSEI_t0849 - 06 Asp tRNA
830525 830597 + 73 116493574 LSEI_t0850 - 17 Phe tRNA
830602 830682 + 81 116493574 LSEI_t0851 - 18 Tyr tRNA
830689 830759 + 71 116493574 LSEI_t0852 - 20 Trp tRNA
830771 830843 + 73 116493574 LSEI_t0853 - 09 His tRNA
830852 830923 + 72 116493574 LSEI_t0854 - 05 Gln tRNA
830966 831036 + 71 116493574 LSEI_t0855 - 19 Cys tRNA
831083 831169 + 87 116493574 LSEI_t0856 - 15 Leu tRNA
845524 847097 + 1574 116493574 LSEI_r0870 - 16S ribosomal RNA
847314 850233 + 2920 116493574 LSEI_r0871 - 23S ribosomal RNA
850429 850548 + 120 116493574 LSEI_r0872 - 5S ribosomal RNA
850554 850626 + 73 116493574 LSEI_t0873 - 07 Asn tRNA
850635 850724 + 90 116493574 LSEI_t0874 - 08 Ser tRNA
850979 851051 + 73 116493574 LSEI_t0875 - 13 Val tRNA
866026 866109 + 84 116493574 LSEI_t0890 - 15 Leu tRNA
946267 946338 + 72 116493574 LSEI_t0964 - 11 Arg tRNA
1024479 1024842 - 364 116493574 LSEI_s1039 - tmRNA
1064149 1064222 + 74 116493574 LSEI_t1079 - 11 Arg tRNA
1122160 1122231 + 72 116493574 LSEI_t1137 - 04 Glu tRNA
1127856 1127926 + 71 116493574 LSEI_t1143 - 05 Gln tRNA
1471442 1471768 - 327 116493574 LSEI_r1477 - RNA_RNaseP_classB
1545912 1545999 + 88 116493574 LSEI_t1551 - 08 Ser tRNA
1644325 1644398 - 74 116493574 LSEI_t1650 - 11 Arg tRNA
1724380 1724450 - 71 116493574 LSEI_t1729 - 01 Gly tRNA
1787305 1787393 + 89 116493574 LSEI_t1794 - 15 Leu tRNA
1806618 1806698 - 81 116493574 LSEI_t1811 - 18 Tyr tRNA
1823054 1823126 - 73 116493574 LSEI_t1825 - 12 Thr tRNA
1823131 1823202 - 72 116493574 LSEI_t1826 - 04 Glu tRNA
1825412 1825484 - 73 116493574 LSEI_t1830 - 07 Asn tRNA
1825492 1825611 - 120 116493574 LSEI_r1831 - 5S ribosomal RNA
1825733 1828652 - 2920 116493574 LSEI_r1832 - 23S ribosomal RNA
1828811 1828883 - 73 116493574 LSEI_t1833 - 02 Ala tRNA
1828915 1828991 - 77 116493574 LSEI_t1834 - 14 Ile tRNA
1829077 1830650 - 1574 116493574 LSEI_r1835 - 16S ribosomal RNA
2217604 2217675 - 72 116493574 LSEI_t2224 - 07 Asn tRNA
2499939 2500012 - 74 116493574 LSEI_t2519 - 03 Pro tRNA
2500017 2500088 - 72 116493574 LSEI_t2520 - 01 Gly tRNA
2500135 2500211 - 77 116493574 LSEI_t2521 - 11 Arg tRNA
2500223 2500308 - 86 116493574 LSEI_t2522 - 15 Leu tRNA
2500320 2500391 - 72 116493574 LSEI_t2523 - 01 Gly tRNA
2500467 2500549 - 83 116493574 LSEI_t2524 - 15 Leu tRNA
2500567 2500639 - 73 116493574 LSEI_t2525 - 10 Lys tRNA
2500642 2500714 - 73 116493574 LSEI_t2526 - 13 Val tRNA
2500721 2500840 - 120 116493574 LSEI_r2527 - 5S ribosomal RNA
2501036 2503955 - 2920 116493574 LSEI_r2528 - 23S ribosomal RNA
2504114 2504186 - 73 116493574 LSEI_t2529 - 02 Ala tRNA
2504218 2504294 - 77 116493574 LSEI_t2530 - 14 Ile tRNA
2504380 2505953 - 1574 116493574 LSEI_r2531 - 16S ribosomal RNA
2620404 2620476 - 73 116493574 LSEI_t2634 - 12 Thr tRNA
2861966 2862038 - 73 116493574 LSEI_t2881 - 10 Lys tRNA
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