Virtual Laboratory Wiki
Advertisement
   LOCUS       NC_008340            3275944 bp    DNA     circular BCT 14-SEP-2006
   DEFINITION  Alkalilimnicola ehrlichei MLHE-1, complete genome.
   ACCESSION   NC_008340
   VERSION     NC_008340.1  GI:114319166
   KEYWORDS    .
   SOURCE      Alkalilimnicola ehrlichei MLHE-1
     ORGANISM  Alkalilimnicola ehrlichei MLHE-1
               Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales;
               Ectothiorhodospiraceae; Alkalilimnicola.
   REFERENCE   1  (bases 1 to 3275944)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Oremland,R.S., Hoeft,S.E., Switzer-Blum,J., Kulp,T.,
               King,G., Tabita,R., Witte,B., Santini,J.M., Basu,P.,
               Hollibaugh,J.T., Xie,G., Stolz,J.F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Alkalilimnicola ehrilichei MLHE-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3275944)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3275944)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Oremland,R.S., Hoeft,S.E., Switzer-Blum,J., Kulp,T.,
               King,G., Tabita,R., Witte,B., Santini,J.M., Basu,P.,
               Hollibaugh,J.T., Xie,G., Stolz,J.F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (28-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000453.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000239
               Source DNA and bacteria available from John F. Stolz
               (stolz@duq.edu)
               Contacts: John F. Stolz (stolz@duq.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
97604 97677 + 74 114319166 Mlg_R0001 - 01 Gly tRNA
274056 274131 - 76 114319166 Mlg_R0002 - 10 Lys tRNA
324945 325019 + 75 114319166 Mlg_R0003 - 05 Gln tRNA
368208 369739 + 1532 114319166 Mlg_R0004 - 16S ribosomal RNA
369818 369894 + 77 114319166 Mlg_R0005 - 14 Ile tRNA
370065 370140 + 76 114319166 Mlg_R0006 - 02 Ala tRNA
370366 373263 + 2898 114319166 Mlg_R0007 - 23S ribosomal RNA
373383 373499 + 117 114319166 Mlg_R0008 - 5S ribosomal RNA
488343 489874 + 1532 114319166 Mlg_R0009 - 16S ribosomal RNA
489953 490029 + 77 114319166 Mlg_R0010 - 14 Ile tRNA
490201 490276 + 76 114319166 Mlg_R0011 - 02 Ala tRNA
490502 493399 + 2898 114319166 Mlg_R0012 - 23S ribosomal RNA
493519 493635 + 117 114319166 Mlg_R0013 - 23S ribosomal RNA
497459 497534 + 76 114319166 Mlg_R0014 - 12 Thr tRNA
499602 499686 + 85 114319166 Mlg_R0015 - 18 Tyr tRNA
499726 499799 + 74 114319166 Mlg_R0016 - 01 Gly tRNA
499821 499896 + 76 114319166 Mlg_R0017 - 12 Thr tRNA
501217 501292 + 76 114319166 Mlg_R0018 - 20 Trp tRNA
539503 539578 + 76 114319166 Mlg_R0019 - 12 Thr tRNA
610119 610193 - 75 114319166 Mlg_R0020 - 04 Glu tRNA
629590 629676 - 87 114319166 Mlg_R0021 - 15 Leu tRNA
643969 644045 + 77 114319166 Mlg_R0022 - 03 Pro tRNA
644094 644170 + 77 114319166 Mlg_R0023 - 11 Arg tRNA
644208 644283 + 76 114319166 Mlg_R0024 - 09 His tRNA
644290 644365 + 76 114319166 Mlg_R0025 - 10 Lys tRNA
680908 680984 - 77 114319166 Mlg_R0026 - 11 Arg tRNA
697040 697115 - 76 114319166 Mlg_R0027 - 02 Ala tRNA
847408 847484 - 77 114319166 Mlg_R0028 - 03 Pro tRNA
887757 887833 - 77 114319166 Mlg_R0029 - 13 Val tRNA
943640 943716 - 77 114319166 Mlg_R0030 - 03 Pro tRNA
1160083 1160172 + 90 114319166 Mlg_R0031 - 08 Ser tRNA
1248149 1248224 - 76 114319166 Mlg_R0032 - 07 Asn tRNA
1415805 1415889 - 85 114319166 Mlg_R0033 - 15 Leu tRNA
1495246 1495336 + 91 114319166 Mlg_R0034 - 08 Ser tRNA
1504176 1504251 + 76 114319166 Mlg_R0035 - 02 Ala tRNA
1504380 1504455 + 76 114319166 Mlg_R0036 - 02 Ala tRNA
1561501 1561576 + 76 114319166 Mlg_R0037 - 01 Gly tRNA
1561705 1561778 + 74 114319166 Mlg_R0038 - 19 Cys tRNA
1561830 1561915 + 86 114319166 Mlg_R0039 - 15 Leu tRNA
1690014 1690090 - 77 114319166 Mlg_R0040 - 11 Arg tRNA
1690137 1690228 - 92 114319166 Mlg_R0041 - 08 Ser tRNA
1723912 1724029 - 118 114319166 Mlg_R0042 - SRP RNA; RNA component of signal recognition particle
1774516 1774590 - 75 114319166 Mlg_R0043 - 13 Val tRNA
1826410 1826497 + 88 114319166 Mlg_R0044 - 08 Ser tRNA
1866616 1866691 - 76 114319166 Mlg_R0045 - 04 Glu tRNA
2175428 2175783 + 356 114319166 Mlg_R0057 - tmRNA
2219534 2219610 - 77 114319166 Mlg_R0046 - 16 Met tRNA
2240609 2240693 - 85 114319166 Mlg_R0047 - 15 Leu tRNA
2509761 2510058 - 298 114319166 Mlg_R0048 - RNA component of RNaseP
2543728 2543801 - 74 114319166 Mlg_R0049 - 05 Gln tRNA
2591270 2591346 - 77 114319166 Mlg_R0050 - 06 Asp tRNA
2591360 2591435 - 76 114319166 Mlg_R0051 - 13 Val tRNA
2598588 2598674 - 87 114319166 Mlg_R0052 - 15 Leu tRNA
2859072 2859148 - 77 114319166 Mlg_R0053 - 16 Met tRNA
3044231 3044307 - 77 114319166 Mlg_R0054 - 11 Arg tRNA
3058396 3058471 + 76 114319166 Mlg_R0055 - 17 Phe tRNA
3081898 3081974 - 77 114319166 Mlg_R0056 - 16 Met tRNA
Advertisement