Virtual Laboratory Wiki
Advertisement
   LOCUS       NC_008148            3225748 bp    DNA     circular BCT 12-JUN-2006
   DEFINITION  Rubrobacter xylanophilus DSM 9941, complete genome.
   ACCESSION   NC_008148
   VERSION     NC_008148.1  GI:108802856
   KEYWORDS    .
   SOURCE      Rubrobacter xylanophilus DSM 9941
     ORGANISM  Rubrobacter xylanophilus DSM 9941
               Bacteria; Actinobacteria; Rubrobacteridae; Rubrobacterales;
               Rubrobacterineae; Rubrobacteraceae; Rubrobacter.
   REFERENCE   1  (bases 1 to 3225748)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., da Costa,M.S., Rainey,F.A., Empadinhas,N., Jolivet,E.,
               Battista,J.R. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Rubrobacter xylanophilus DSM 9941
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3225748)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3225748)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., da Costa,M.S., Rainey,F.A., Empadinhas,N., Jolivet,E.,
               Battista,J.R. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (07-JUN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000386.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3436081
               Source DNA available from John R. Battista (jbattis@lsu.edu)
               Bacteria available from DSMZ: DSM 9941
               Contacts: John R. Battista (jbattis@lsu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
11389 11749 + 361 108802856 Rxyl_R0001 - RNaseP RNA
15245 15317 - 73 108802856 Rxyl_R0002 - 01 Gly tRNA
30643 30726 + 84 108802856 Rxyl_R0003 - 15 Leu tRNA
298314 298455 + 142 108802856 Rxyl_R0004 -
371715 371785 + 71 108802856 Rxyl_R0005 - 05 Gln tRNA
619467 619540 - 74 108802856 Rxyl_R0006 - 11 Arg tRNA
663892 664074 + 183 108802856 Rxyl_R0007 -
780592 780681 - 90 108802856 Rxyl_R0008 - 08 Ser tRNA
881920 882031 - 112 108802856 Rxyl_R0009 -
934242 934315 + 74 108802856 Rxyl_R0010 - 05 Gln tRNA
955404 955477 + 74 108802856 Rxyl_R0011 - 15 Leu tRNA
1024685 1024758 + 74 108802856 Rxyl_R0012 - 03 Pro tRNA
1038628 1038702 + 75 108802856 Rxyl_R0013 - 10 Lys tRNA
1038703 1038775 + 73 108802856 Rxyl_R0014 - 04 Glu tRNA
1038792 1038863 + 72 108802856 Rxyl_R0015 - 13 Val tRNA
1040076 1040149 + 74 108802856 Rxyl_R0016 - 06 Asp tRNA
1040568 1040640 + 73 108802856 Rxyl_R0017 - 17 Phe tRNA
1121068 1121189 + 122 108802856 Rxyl_R0018 -
1324076 1324148 + 73 108802856 Rxyl_R0019 - 01 Gly tRNA
1324169 1324239 + 71 108802856 Rxyl_R0020 - 19 Cys tRNA
1324262 1324333 + 72 108802856 Rxyl_R0021 - 13 Val tRNA
1337366 1338878 + 1513 108802856 Rxyl_R0022 - 16S ribosomal RNA
1339144 1342143 + 3000 108802856 Rxyl_R0023 - 23S ribosomal RNA
1342229 1342345 + 117 108802856 Rxyl_R0024 - 5S ribosomal RNA
1391592 1391741 + 150 108802856 Rxyl_R0025 -
1521231 1521304 - 74 108802856 Rxyl_R0026 - 16 Met tRNA
1521307 1521381 - 75 108802856 Rxyl_R0027 - 07 Asn tRNA
1539823 1539895 - 73 108802856 Rxyl_R0028 - 02 Ala tRNA
1556071 1556154 - 84 108802856 Rxyl_R0029 - 15 Leu tRNA
1584674 1584746 - 73 108802856 Rxyl_R0030 - 09 His tRNA
1616352 1616424 - 73 108802856 Rxyl_R0031 - 11 Arg tRNA
1625329 1625399 - 71 108802856 Rxyl_R0032 - 01 Gly tRNA
1625420 1625494 - 75 108802856 Rxyl_R0033 - 03 Pro tRNA
1626431 1626790 - 360 108802856 Rxyl_R0034 - tmRNA
1947946 1948018 - 73 108802856 Rxyl_R0035 - 12 Thr tRNA
2002611 2002699 - 89 108802856 Rxyl_R0036 - Sec tRNA
2024178 2024265 + 88 108802856 Rxyl_R0037 - 15 Leu tRNA
2059938 2060021 + 84 108802856 Rxyl_R0038 - 15 Leu tRNA
2112145 2112255 + 111 108802856 Rxyl_R0039 -
2184005 2184077 - 73 108802856 Rxyl_R0040 - 20 Trp tRNA
2185578 2185651 - 74 108802856 Rxyl_R0041 - 16 Met tRNA
2185683 2185755 - 73 108802856 Rxyl_R0042 - 12 Thr tRNA
2185766 2185851 - 86 108802856 Rxyl_R0043 - 18 Tyr tRNA
2185936 2186007 - 72 108802856 Rxyl_R0044 - 12 Thr tRNA
2206288 2206361 - 74 108802856 Rxyl_R0045 - 16 Met tRNA
2228976 2229050 + 75 108802856 Rxyl_R0046 - 13 Val tRNA
2293628 2293700 + 73 108802856 Rxyl_R0047 - 02 Ala tRNA
2295938 2296043 + 106 108802856 Rxyl_R0048 -
2304069 2304141 - 73 108802856 Rxyl_R0049 - 11 Arg tRNA
2308212 2308285 - 74 108802856 Rxyl_R0050 - 03 Pro tRNA
2406044 2406137 + 94 108802856 Rxyl_R0051 -
2455474 2455546 - 73 108802856 Rxyl_R0052 - 02 Ala tRNA
2457560 2457662 + 103 108802856 Rxyl_R0053 - SRP RNA; RNA component of signal recognition particle
2476169 2476242 - 74 108802856 Rxyl_R0054 - 14 Ile tRNA
2484065 2484294 + 230 108802856 Rxyl_R0055 -
2590390 2590480 - 91 108802856 Rxyl_R0056 - 08 Ser tRNA
2605957 2606029 + 73 108802856 Rxyl_R0057 - 11 Arg tRNA
2661013 2661085 + 73 108802856 Rxyl_R0058 - 10 Lys tRNA
2670191 2670275 - 85 108802856 Rxyl_R0059 - 08 Ser tRNA
2803867 2803972 - 106 108802856 Rxyl_R0060 -
2863858 2863933 + 76 108802856 Rxyl_R0061 - 04 Glu tRNA
2875142 2875231 - 90 108802856 Rxyl_R0062 - 08 Ser tRNA
3199881 3199953 - 73 108802856 Rxyl_R0063 -
3199954 3200053 - 100 108802856 Rxyl_R0064 -
Advertisement