NC 008043

   LOCUS       NC_008043             821788 bp    DNA     circular BCT 24-MAY-2006
   DEFINITION  Silicibacter sp. TM1040 mega plasmid, complete sequence.
   ACCESSION   NC_008043
   VERSION     NC_008043.1  GI:99078009
   KEYWORDS    .
   SOURCE      Silicibacter sp. TM1040
     ORGANISM  Silicibacter sp. TM1040
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Silicibacter.
   REFERENCE   1  (bases 1 to 821788)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M.,
               Schell,M.A., Sun,F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of MegaPlasmid of Silicibacter sp. TM1040
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 821788)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAY-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 821788)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M.,
               Schell,M.A., Sun,F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000376.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634501
               Source DNA and bacteria available from Mary Ann Moran
               (mmoran@uga.edu)
               Contacts: Mary Ann Moran (mmoran@uga.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
56033	56119	-	87	99078009	TM1040_R0052	-	^{15 Leu tRNA}
101719	101795	-	77	99078009	TM1040_R0053	-	^{11 Arg tRNA}
173064	173140	-	77	99078009	TM1040_R0054	-	^{16 Met tRNA}
173192	173306	-	115	99078009	TM1040_R0055	-	5S ribosomal RNA
173544	176387	-	2844	99078009	TM1040_R0056	-	23S ribosomal RNA
176932	177007	-	76	99078009	TM1040_R0057	-	^{02 Ala tRNA}
177073	177149	-	77	99078009	TM1040_R0058	-	^{14 Ile tRNA}
177290	178744	-	1455	99078009	TM1040_R0059	-	16S ribosomal RNA
309837	309913	-	77	99078009	TM1040_R0060	-	^{11 Arg tRNA}
319773	319904	-	132	99078009	TM1040_R0061	-
403923	403998	-	76	99078009	TM1040_R0062	-	^{02 Ala tRNA}
505993	507447	+	1455	99078009	TM1040_R0063	-	16S ribosomal RNA
507587	507663	+	77	99078009	TM1040_R0064	-	^{14 Ile tRNA}
507729	507804	+	76	99078009	TM1040_R0065	-	^{02 Ala tRNA}
508349	511192	+	2844	99078009	TM1040_R0066	-	23S ribosomal RNA
511430	511544	+	115	99078009	TM1040_R0067	-	5S ribosomal RNA
511596	511672	+	77	99078009	TM1040_R0068	-	^{16 Met tRNA}
598854	598928	-	75	99078009	TM1040_R0069	-	^{17 Phe tRNA}
605916	605990	-	75	99078009	TM1040_R0070	-	^{12 Thr tRNA}
622244	623698	+	1455	99078009	TM1040_R0071	-	16S ribosomal RNA
623839	623915	+	77	99078009	TM1040_R0072	-	^{14 Ile tRNA}
623981	624056	+	76	99078009	TM1040_R0073	-	^{02 Ala tRNA}
624601	627444	+	2844	99078009	TM1040_R0074	-	23S ribosomal RNA
627682	627796	+	115	99078009	TM1040_R0075	-	5S ribosomal RNA
627848	627924	+	77	99078009	TM1040_R0076	-	^{16 Met tRNA}
637570	637659	-	90	99078009	TM1040_R0077	-	^{08 Ser tRNA}
690461	690536	-	76	99078009	TM1040_R0078	-	^{12 Thr tRNA}
704802	704905	+	104	99078009	TM1040_R0079	-
815517	815593	-	77	99078009	TM1040_R0080	-	^{03 Pro tRNA}