NC 008042

   LOCUS       NC_008042             130973 bp    DNA     circular BCT 24-MAY-2006
   DEFINITION  Silicibacter sp. TM1040 plasmid unnamed, complete sequence.
   ACCESSION   NC_008042
   VERSION     NC_008042.1  GI:99077902
   KEYWORDS    .
   SOURCE      Silicibacter sp. TM1040
     ORGANISM  Silicibacter sp. TM1040
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
               Rhodobacteraceae; Silicibacter.
   REFERENCE   1  (bases 1 to 130973)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M.,
               Schell,M.A., Sun,F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Plasmid of Silicibacter sp. TM1040
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 130973)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (23-MAY-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 130973)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Goodwin,L., Thompson,L.S.,
               Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Kim,E., Belas,R., Moran,M.A., Buchan,A., Gonzalez,J.M.,
               Schell,M.A., Sun,F. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (11-MAY-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000375.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634501
               Source DNA and bacteria available from Mary Ann Moran
               (mmoran@uga.edu)
               Contacts: Mary Ann Moran (mmoran@uga.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
8272	8348	-	77	99077902	TM1040_R0081	-	^{16 Met tRNA}
8400	8514	-	115	99077902	TM1040_R0082	-	5S ribosomal RNA
8752	11595	-	2844	99077902	TM1040_R0083	-	23S ribosomal RNA
12084	12159	-	76	99077902	TM1040_R0084	-	^{02 Ala tRNA}
12225	12301	-	77	99077902	TM1040_R0085	-	^{14 Ile tRNA}
12441	13895	-	1455	99077902	TM1040_R0086	-	16S ribosomal RNA
23609	23684	-	76	99077902	TM1040_R0087	-	^{12 Thr tRNA}