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   LOCUS       NC_008025            2467205 bp    DNA     circular BCT 09-MAY-2006
   DEFINITION  Deinococcus geothermalis DSM 11300, complete genome.
   ACCESSION   NC_008025
   VERSION     NC_008025.1  GI:94984109
   KEYWORDS    .
   SOURCE      Deinococcus geothermalis DSM 11300
     ORGANISM  Deinococcus geothermalis DSM 11300
               Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales;
               Deinococcaceae; Deinococcus.
   REFERENCE   1  (bases 1 to 2467205)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K.,
               Zhai,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of geothermalis DSM 11300
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 2467205)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-MAY-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2467205)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E.,
               Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K.,
               Zhai,M. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000359.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634504
               Source DNA available from Michael J Daly (mdaly@usuhs.mil)
               Bacteria available from DSMZ: DSM 11300
               Contacts: Michael J Daly (mdaly@usuhs.mil)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
78888 78963 + 76 94984109 Dgeo_R0001 - 10 Lys tRNA
157596 159088 + 1493 94984109 Dgeo_R0002 - 16S ribosomal RNA
177593 177668 + 76 94984109 Dgeo_R0003 - 06 Asp tRNA
177691 177766 + 76 94984109 Dgeo_R0004 - 17 Phe tRNA
227331 227407 - 77 94984109 Dgeo_R0005 - 03 Pro tRNA
231944 232019 - 76 94984109 Dgeo_R0006 - 20 Trp tRNA
291095 291247 + 153 94984109 Dgeo_R0007 -
325852 328741 + 2890 94984109 Dgeo_R0008 - 23S ribosomal RNA
328825 328941 + 117 94984109 Dgeo_R0009 - 5S ribosomal RNA
328951 329026 + 76 94984109 Dgeo_R0010 - 01 Gly tRNA
355227 355301 - 75 94984109 Dgeo_R0011 - 04 Glu tRNA
397070 397143 + 74 94984109 Dgeo_R0012 - 05 Gln tRNA
400326 401818 + 1493 94984109 Dgeo_R0013 - 16S ribosomal RNA
435353 435427 - 75 94984109 Dgeo_R0014 - 07 Asn tRNA
440201 440277 + 77 94984109 Dgeo_R0015 - 09 His tRNA
440331 440416 + 86 94984109 Dgeo_R0016 - 15 Leu tRNA
504686 504760 + 75 94984109 Dgeo_R0017 - 04 Glu tRNA
547213 547339 - 127 94984109 Dgeo_R0018 -
582403 582478 - 76 94984109 Dgeo_R0019 - 02 Ala tRNA
655453 655527 + 75 94984109 Dgeo_R0020 - 02 Ala tRNA
699950 700024 - 75 94984109 Dgeo_R0021 - 12 Thr tRNA
700034 700106 - 73 94984109 Dgeo_R0022 - 01 Gly tRNA
700110 700195 - 86 94984109 Dgeo_R0023 - 18 Tyr tRNA
700256 700331 - 76 94984109 Dgeo_R0024 - 12 Thr tRNA
827461 827828 + 368 94984109 Dgeo_R0025 - RNA component of RNaseP
1416271 1416345 - 75 94984109 Dgeo_R0026 - 13 Val tRNA
1435008 1435090 - 83 94984109 Dgeo_R0027 - 15 Leu tRNA
1463818 1463894 + 77 94984109 Dgeo_R0028 - 16 Met tRNA
1521063 1521139 + 77 94984109 Dgeo_R0029 - 03 Pro tRNA
1530030 1530105 - 76 94984109 Dgeo_R0030 - 10 Lys tRNA
1599558 1599632 - 75 94984109 Dgeo_R0031 - 13 Val tRNA
1599646 1599719 - 74 94984109 Dgeo_R0032 - 19 Cys tRNA
1647172 1647261 - 90 94984109 Dgeo_R0033 - 08 Ser tRNA
1676412 1676485 - 74 94984109 Dgeo_R0034 - 05 Gln tRNA
1702114 1702190 - 77 94984109 Dgeo_R0035 - 11 Arg tRNA
1850752 1850828 - 77 94984109 Dgeo_R0036 - 14 Ile tRNA
1886401 1886476 + 76 94984109 Dgeo_R0037 - 06 Asp tRNA
1916667 1916743 - 77 94984109 Dgeo_R0038 - 11 Arg tRNA
1916762 1916854 - 93 94984109 Dgeo_R0039 - 08 Ser tRNA
1916880 1916967 - 88 94984109 Dgeo_R0040 - 08 Ser tRNA
2010487 2010562 - 76 94984109 Dgeo_R0041 - 01 Gly tRNA
2010573 2010689 - 117 94984109 Dgeo_R0042 - 5S ribosomal RNA
2010773 2013662 - 2890 94984109 Dgeo_R0043 - 23S ribosomal RNA
2028181 2028298 - 118 94984109 Dgeo_R0044 -
2036288 2036401 + 114 94984109 Dgeo_R0045 -
2087728 2087804 - 77 94984109 Dgeo_R0046 - 16 Met tRNA
2087843 2087918 - 76 94984109 Dgeo_R0047 - 02 Ala tRNA
2090397 2090471 - 75 94984109 Dgeo_R0048 - 13 Val tRNA
2090498 2090573 - 76 94984109 Dgeo_R0049 - 16 Met tRNA
2111082 2111171 + 90 94984109 Dgeo_R0050 - 08 Ser tRNA
2118878 2119225 + 348 94984109 Dgeo_R0051 - tmRNA
2129216 2129302 + 87 94984109 Dgeo_R0052 - 15 Leu tRNA
2216152 2216226 - 75 94984109 Dgeo_R0053 - 12 Thr tRNA
2277302 2277386 - 85 94984109 Dgeo_R0054 - 15 Leu tRNA
2311081 2311164 + 84 94984109 Dgeo_R0055 - 15 Leu tRNA
2311247 2311352 + 106 94984109 Dgeo_R0056 - SRP RNA; RNA component of signal recognition particle
2353553 2353629 - 77 94984109 Dgeo_R0057 - 11 Arg tRNA
2353665 2353738 - 74 94984109 Dgeo_R0058 - 01 Gly tRNA
2353766 2353842 - 77 94984109 Dgeo_R0059 - 03 Pro tRNA
2360347 2361839 - 1493 94984109 Dgeo_R0060 - 16S ribosomal RNA
2372571 2372646 - 76 94984109 Dgeo_R0061 - 01 Gly tRNA
2372657 2372773 - 117 94984109 Dgeo_R0062 - 5S ribosomal RNA
2372857 2375746 - 2890 94984109 Dgeo_R0063 - 23S ribosomal RNA
2441584 2441660 - 77 94984109 Dgeo_R0064 - 11 Arg tRNA
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