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   LOCUS       NC_008009            5650368 bp    DNA     circular BCT 10-MAY-2006
   DEFINITION  Candidatus Koribacter versatilis Ellin345, complete genome.
   ACCESSION   NC_008009
   VERSION     NC_008009.1  GI:94967031
   KEYWORDS    .
   SOURCE      Candidatus Koribacter versatilis Ellin345
     ORGANISM  Candidatus Koribacter versatilis Ellin345
               Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae.
   REFERENCE   1  (bases 1 to 5650368)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Kiss,H., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., Kuske,C., Janssen,P.H. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Acidobacteria bacterium Ellin345
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5650368)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-MAY-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5650368)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Kiss,H., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Lykidis,A., Kuske,C., Janssen,P.H. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (25-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000360.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000157
               Source DNA and bacteria available from Cheryl Kuske
               (kuske@lanl.gov)
               Contacts: Cheryl Kuske (kuske@lanl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
226249 226325 - 77 94967031 Acid345_R0001 - 11 Arg tRNA
321964 322040 - 77 94967031 Acid345_R0002 - 03 Pro tRNA
327098 327184 + 87 94967031 Acid345_R0003 - 15 Leu tRNA
436855 436916 + 62 94967031 Acid345_R0004 -
478049 478137 + 89 94967031 Acid345_R0005 - 15 Leu tRNA
623241 623317 + 77 94967031 Acid345_R0006 - 03 Pro tRNA
782919 782994 + 76 94967031 Acid345_R0007 - 10 Lys tRNA
965656 965730 + 75 94967031 Acid345_R0008 - 13 Val tRNA
1015247 1015321 + 75 94967031 Acid345_R0009 - 01 Gly tRNA
1015412 1015486 + 75 94967031 Acid345_R0010 - 19 Cys tRNA
1319335 1319410 + 76 94967031 Acid345_R0011 - 17 Phe tRNA
1343299 1343372 - 74 94967031 Acid345_R0012 - 05 Gln tRNA
1411021 1411096 + 76 94967031 Acid345_R0013 - 12 Thr tRNA
1549908 1550249 - 342 94967031 Acid345_R0014 - RNA component of RNaseP
2183383 2183459 - 77 94967031 Acid345_R0015 - 11 Arg tRNA
2275711 2275787 - 77 94967031 Acid345_R0016 - 11 Arg tRNA
2284754 2284838 - 85 94967031 Acid345_R0017 - 15 Leu tRNA
2308256 2308330 + 75 94967031 Acid345_R0018 - 07 Asn tRNA
2354596 2354670 - 75 94967031 Acid345_R0019 - 01 Gly tRNA
2379908 2379997 - 90 94967031 Acid345_R0020 - 08 Ser tRNA
2416096 2416209 + 114 94967031 Acid345_R0021 - SRP RNA; RNA component of signal recognition particle
2480985 2481062 - 78 94967031 Acid345_R0022 - 04 Glu tRNA
2568155 2568230 + 76 94967031 Acid345_R0023 - 02 Ala tRNA
2891224 2891308 + 85 94967031 Acid345_R0024 - 15 Leu tRNA
3278034 3278109 + 76 94967031 Acid345_R0025 - 10 Lys tRNA
3458746 3458821 - 76 94967031 Acid345_R0026 - Xaa tRNA
3720631 3720719 - 89 94967031 Acid345_R0027 - 15 Leu tRNA
3783475 3783551 + 77 94967031 Acid345_R0028 - 11 Arg tRNA
3907637 3907713 - 77 94967031 Acid345_R0029 - 16 Met tRNA
4130979 4131054 + 76 94967031 Acid345_R0030 - 16 Met tRNA
4184267 4184328 + 62 94967031 Acid345_R0031 -
4447548 4447637 - 90 94967031 Acid345_R0032 - 08 Ser tRNA
4551744 4551819 - 76 94967031 Acid345_R0033 - 02 Ala tRNA
4614262 4614336 - 75 94967031 Acid345_R0034 - 04 Glu tRNA
4616518 4616592 + 75 94967031 Acid345_R0035 - 09 His tRNA
4689838 4689914 - 77 94967031 Acid345_R0036 - 03 Pro tRNA
4748291 4748368 + 78 94967031 Acid345_R0037 - 13 Val tRNA
4763124 4763200 - 77 94967031 Acid345_R0038 - 06 Asp tRNA
4763226 4763302 - 77 94967031 Acid345_R0039 - 13 Val tRNA
4776758 4776834 + 77 94967031 Acid345_R0040 - 11 Arg tRNA
5023050 5023126 - 77 94967031 Acid345_R0041 - 16 Met tRNA
5080202 5080294 - 93 94967031 Acid345_R0042 - 08 Ser tRNA
5256011 5256127 - 117 94967031 Acid345_R0043 - 5S ribosomal RNA
5256362 5259327 - 2966 94967031 Acid345_R0044 - 23S ribosomal RNA
5259667 5259742 - 76 94967031 Acid345_R0045 - 02 Ala tRNA
5259750 5259826 - 77 94967031 Acid345_R0046 - 14 Ile tRNA
5260068 5261561 - 1494 94967031 Acid345_R0047 - 16S ribosomal RNA
5276687 5276776 - 90 94967031 Acid345_R0048 - 08 Ser tRNA
5323474 5323676 - 203 94967031 Acid345_R0049 -
5385087 5385160 - 74 94967031 Acid345_R0050 - 05 Gln tRNA
5543513 5543588 - 76 94967031 Acid345_R0051 - 20 Trp tRNA
5545511 5545586 - 76 94967031 Acid345_R0052 - 12 Thr tRNA
5545607 5545681 - 75 94967031 Acid345_R0053 - 01 Gly tRNA
5545970 5546057 - 88 94967031 Acid345_R0054 - 18 Tyr tRNA
5546322 5546397 - 76 94967031 Acid345_R0055 - 12 Thr tRNA
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