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   LOCUS       NC_007973            3928089 bp    DNA     circular BCT 19-DEC-2006
   DEFINITION  Ralstonia metallidurans CH34 chromosome 1, complete sequence.
   ACCESSION   NC_007973
   VERSION     NC_007973.1  GI:94308945
   KEYWORDS    .
   SOURCE      Ralstonia metallidurans CH34
     ORGANISM  Ralstonia metallidurans CH34
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Burkholderiaceae; Cupriavidus.
   REFERENCE   1  (bases 1 to 3928089)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M.,
               Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A.,
               Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S.,
               Taghavi,S., van der Lelie,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome 1 of Ralstonia metallidurans CH34
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3928089)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (27-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3928089)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Martinez,M.,
               Goltsman,E., Pitluck,S., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyrpides,N., Kim,E., Mergeay,M., Benotmane,M.A.,
               Vallaeys,T., Michaux,A., Monchy,S., Dunn,J., McCorkle,S.,
               Taghavi,S., van der Lelie,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (18-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000352.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2351356
               Source DNA and bacteria available from John J. Dunn (jdunn@bnl.gov)
               Contacts: John J. Dunn (jdunn@bnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
169782 169883 + 102 94308945 Rmet_R0001 -
204307 204381 + 75 94308945 Rmet_R0002 - 19 Cys tRNA
305620 305696 - 77 94308945 Rmet_R0003 - 05 Gln tRNA
435726 436006 + 281 94308945 Rmet_R0004 - RNA component of RNaseP
490489 490565 - 77 94308945 Rmet_R0005 - 16 Met tRNA
768497 768586 + 90 94308945 Rmet_R0006 - 08 Ser tRNA
785497 785856 - 360 94308945 Rmet_R0007 - tmRNA
929831 929920 - 90 94308945 Rmet_R0008 - 08 Ser tRNA
940981 941057 + 77 94308945 Rmet_R0009 - 11 Arg tRNA
942032 942108 + 77 94308945 Rmet_R0010 - 16 Met tRNA
955687 955762 - 76 94308945 Rmet_R0011 - 12 Thr tRNA
971944 972115 - 172 94308945 Rmet_R0012 -
1012294 1012378 + 85 94308945 Rmet_R0013 - 15 Leu tRNA
1183005 1183098 + 94 94308945 Rmet_R0014 - 08 Ser tRNA
1269604 1269680 + 77 94308945 Rmet_R0015 - 13 Val tRNA
1278235 1278311 + 77 94308945 Rmet_R0016 - 03 Pro tRNA
1297980 1298055 - 76 94308945 Rmet_R0017 - 10 Lys tRNA
1300792 1300867 - 76 94308945 Rmet_R0018 - 10 Lys tRNA
1336450 1336525 - 76 94308945 Rmet_R0019 - 16 Met tRNA
2046395 2046471 - 77 94308945 Rmet_R0020 - 06 Asp tRNA
2046515 2046590 - 76 94308945 Rmet_R0021 - 13 Val tRNA
2093378 2093464 - 87 94308945 Rmet_R0022 - 15 Leu tRNA
2160684 2160759 - 76 94308945 Rmet_R0023 - 09 His tRNA
2184912 2184987 - 76 94308945 Rmet_R0024 - 16 Met tRNA
2273445 2273531 + 87 94308945 Rmet_R0025 - 15 Leu tRNA
2315225 2315328 + 104 94308945 Rmet_R0026 - SRP RNA; RNA component of signal recognition particle
2329479 2329555 - 77 94308945 Rmet_R0027 - 06 Asp tRNA
2329622 2329697 - 76 94308945 Rmet_R0028 - 04 Glu tRNA
2329807 2329882 - 76 94308945 Rmet_R0029 - 02 Ala tRNA
2330033 2330109 - 77 94308945 Rmet_R0030 - 06 Asp tRNA
2330176 2330251 - 76 94308945 Rmet_R0031 - 04 Glu tRNA
2330259 2330334 - 76 94308945 Rmet_R0032 - 02 Ala tRNA
2377926 2377999 - 74 94308945 Rmet_R0033 - 11 Arg tRNA
2379877 2379953 + 77 94308945 Rmet_R0034 - 03 Pro tRNA
2422155 2422229 + 75 94308945 Rmet_R0035 - 13 Val tRNA
2483060 2483150 + 91 94308945 Rmet_R0036 - 08 Ser tRNA
2504604 2504689 + 86 94308945 Rmet_R0037 - 15 Leu tRNA
2508446 2508519 - 74 94308945 Rmet_R0038 - 19 Cys tRNA
2618213 2618288 - 76 94308945 Rmet_R0039 - 01 Gly tRNA
2618372 2618447 - 76 94308945 Rmet_R0040 - 01 Gly tRNA
2664646 2664721 + 76 94308945 Rmet_R0041 - 07 Asn tRNA
2786048 2786122 - 75 94308945 Rmet_R0042 - 11 Arg tRNA
2792588 2792725 + 138 94308945 Rmet_R0043 -
2833665 2833743 - 79 94308945 Rmet_R0044 - 16 Met tRNA
2904993 2905068 - 76 94308945 Rmet_R0045 - 10 Lys tRNA
2937778 2937852 + 75 94308945 Rmet_R0046 - 01 Gly tRNA
3037311 3037573 - 263 94308945 Rmet_R0047 -
3071451 3071535 + 85 94308945 Rmet_R0048 - 15 Leu tRNA
3366865 3366941 + 77 94308945 Rmet_R0049 - 03 Pro tRNA
3427573 3427686 - 114 94308945 Rmet_R0050 - 5S ribosomal RNA
3427866 3430683 - 2818 94308945 Rmet_R0051 - 23S ribosomal RNA
3430966 3431041 - 76 94308945 Rmet_R0052 - 02 Ala tRNA
3431053 3431129 - 77 94308945 Rmet_R0053 - 14 Ile tRNA
3431194 3432720 - 1527 94308945 Rmet_R0054 - 16S ribosomal RNA
3502848 3502923 - 76 94308945 Rmet_R0055 - 12 Thr tRNA
3610792 3610867 - 76 94308945 Rmet_R0056 - 20 Trp tRNA
3612186 3612260 - 75 94308945 Rmet_R0057 - 12 Thr tRNA
3612298 3612371 - 74 94308945 Rmet_R0058 - 01 Gly tRNA
3612422 3612507 - 86 94308945 Rmet_R0059 - 18 Tyr tRNA
3612806 3612919 - 114 94308945 Rmet_R0060 - 5S ribosomal RNA
3613099 3615916 - 2818 94308945 Rmet_R0061 - 23S ribosomal RNA
3616199 3616274 - 76 94308945 Rmet_R0062 - 02 Ala tRNA
3616286 3616362 - 77 94308945 Rmet_R0063 - 14 Ile tRNA
3616427 3617953 - 1527 94308945 Rmet_R0064 - 16S ribosomal RNA
3697701 3697776 - 76 94308945 Rmet_R0065 - 02 Ala tRNA
3751721 3751796 - 76 94308945 Rmet_R0066 - 11 Arg tRNA
3761298 3761385 + 88 94308945 Rmet_R0067 -
3761407 3761526 + 120 94308945 Rmet_R0068 -
3859161 3859236 - 76 94308945 Rmet_R0069 - 17 Phe tRNA
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