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   LOCUS       NC_007963            3696649 bp    DNA     circular BCT 17-APR-2006
   DEFINITION  Chromohalobacter salexigens DSM 3043, complete genome.
   ACCESSION   NC_007963
   VERSION     NC_007963.1  GI:92112136
   KEYWORDS    .
   SOURCE      Chromohalobacter salexigens DSM 3043
     ORGANISM  Chromohalobacter salexigens DSM 3043
               Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
               Halomonadaceae; Chromohalobacter.
   REFERENCE   1  (bases 1 to 3696649)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Saunders,E.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromohalobacter salexigens DSM 3043
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 3696649)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (17-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3696649)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Saunders,E.,
               Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (15-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000285.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634505
               Source DNA available from Laszlo Csonka
               (lcsonka@bilbo.bio.purdue.edu)
               Bacteria available from DSMZ: DSM 3043
               Contacts:
                         Laszlo Csonka (lcsonka@bilbo.bio.purdue.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
454940 456413 + 1474 92112136 Csal_R0001 - 16S ribosomal RNA
456548 456624 + 77 92112136 Csal_R0002 - 14 Ile tRNA
456732 456807 + 76 92112136 Csal_R0003 - 02 Ala tRNA
456987 459883 + 2897 92112136 Csal_R0004 - 23S ribosomal RNA
459986 460101 + 116 92112136 Csal_R0005 - 5S ribosomal RNA
462206 462289 + 84 92112136 Csal_R0006 - 18 Tyr tRNA
462339 462412 + 74 92112136 Csal_R0007 - 01 Gly tRNA
462421 462495 + 75 92112136 Csal_R0008 - 12 Thr tRNA
462617 462692 + 76 92112136 Csal_R0009 - 20 Trp tRNA
522085 522161 - 77 92112136 Csal_R0010 - 03 Pro tRNA
557343 558816 + 1474 92112136 Csal_R0011 - 16S ribosomal RNA
558957 559033 + 77 92112136 Csal_R0012 - 14 Ile tRNA
559251 559326 + 76 92112136 Csal_R0013 - 02 Ala tRNA
559506 562402 + 2897 92112136 Csal_R0014 - 23S ribosomal RNA
562505 562620 + 116 92112136 Csal_R0015 - 5S ribosomal RNA
580057 580132 + 76 92112136 Csal_R0016 - 17 Phe tRNA
580139 580213 + 75 92112136 Csal_R0017 - 05 Gln tRNA
580235 580310 + 76 92112136 Csal_R0018 - 12 Thr tRNA
584792 584867 + 76 92112136 Csal_R0019 - 12 Thr tRNA
705419 705511 + 93 92112136 Csal_R0020 - 08 Ser tRNA
705541 705617 + 77 92112136 Csal_R0021 - 11 Arg tRNA
705704 705780 + 77 92112136 Csal_R0022 - 11 Arg tRNA
951832 951906 + 75 92112136 Csal_R0023 - 10 Lys tRNA
951949 952023 + 75 92112136 Csal_R0024 - 10 Lys tRNA
952058 952132 + 75 92112136 Csal_R0025 - 10 Lys tRNA
985955 986030 + 76 92112136 Csal_R0026 - 13 Val tRNA
986081 986157 + 77 92112136 Csal_R0027 - 06 Asp tRNA
986206 986282 + 77 92112136 Csal_R0028 - 06 Asp tRNA
986339 986415 + 77 92112136 Csal_R0029 - 13 Val tRNA
986438 986514 + 77 92112136 Csal_R0030 - 06 Asp tRNA
997605 997691 - 87 92112136 Csal_R0031 - 15 Leu tRNA
997716 997802 - 87 92112136 Csal_R0032 - 15 Leu tRNA
997838 997924 - 87 92112136 Csal_R0033 - 15 Leu tRNA
1078902 1079036 - 135 92112136 Csal_R0034 -
1196492 1196568 + 77 92112136 Csal_R0035 - 16 Met tRNA
1252992 1253128 + 137 92112136 Csal_R0036 -
1386433 1386508 + 76 92112136 Csal_R0037 - 02 Ala tRNA
1386525 1386600 + 76 92112136 Csal_R0038 - 04 Glu tRNA
1431797 1431872 - 76 92112136 Csal_R0039 - 01 Gly tRNA
1548665 1548740 + 76 92112136 Csal_R0040 - 04 Glu tRNA
1548764 1548838 + 75 92112136 Csal_R0041 - 01 Gly tRNA
1549001 1549076 + 76 92112136 Csal_R0042 - 04 Glu tRNA
1549118 1549192 + 75 92112136 Csal_R0043 - 01 Gly tRNA
1549215 1549290 + 76 92112136 Csal_R0044 - 04 Glu tRNA
1553348 1553435 + 88 92112136 Csal_R0045 - 08 Ser tRNA
1651738 1651855 + 118 92112136 Csal_R0046 - SRP RNA; RNA component of signal recognition particle
1704632 1704863 - 232 92112136 Csal_R0047 -
1726909 1726985 + 77 92112136 Csal_R0048 - 16 Met tRNA
1727230 1727305 + 76 92112136 Csal_R0049 - 07 Asn tRNA
1727328 1727403 + 76 92112136 Csal_R0050 - 07 Asn tRNA
1727432 1727507 + 76 92112136 Csal_R0051 - 07 Asn tRNA
1733361 1733437 - 77 92112136 Csal_R0052 - 16 Met tRNA
1737126 1737201 - 76 92112136 Csal_R0053 - 05 Gln tRNA
2039871 2039947 - 77 92112136 Csal_R0054 - 03 Pro tRNA
2078081 2079554 + 1474 92112136 Csal_R0055 - 16S ribosomal RNA
2079689 2079765 + 77 92112136 Csal_R0056 - 14 Ile tRNA
2079887 2079962 + 76 92112136 Csal_R0057 - 02 Ala tRNA
2080142 2083038 + 2897 92112136 Csal_R0058 - 23S ribosomal RNA
2083141 2083256 + 116 92112136 Csal_R0059 - 5S ribosomal RNA
2185514 2185603 + 90 92112136 Csal_R0060 - 08 Ser tRNA
2185723 2185813 + 91 92112136 Csal_R0061 - 08 Ser tRNA
2189682 2189788 + 107 92112136 Csal_R0062 -
2311526 2311600 - 75 92112136 Csal_R0063 - 09 His tRNA
2311634 2311708 - 75 92112136 Csal_R0064 - 09 His tRNA
2311759 2311835 - 77 92112136 Csal_R0065 - 11 Arg tRNA
2311895 2311971 - 77 92112136 Csal_R0066 - 03 Pro tRNA
2371927 2372003 - 77 92112136 Csal_R0067 - 13 Val tRNA
2372065 2372141 - 77 92112136 Csal_R0068 - 13 Val tRNA
2399776 2399851 - 76 92112136 Csal_R0069 - 02 Ala tRNA
2403437 2403511 + 75 92112136 Csal_R0070 - 01 Gly tRNA
2403586 2403659 + 74 92112136 Csal_R0071 - 19 Cys tRNA
2403695 2403781 + 87 92112136 Csal_R0072 - 15 Leu tRNA
2475702 2476000 - 299 92112136 Csal_R0073 - RNA component of RNaseP
2584594 2584678 - 85 92112136 Csal_R0074 - 15 Leu tRNA
2715800 2715915 - 116 92112136 Csal_R0075 - 5S ribosomal RNA
2716018 2718915 - 2898 92112136 Csal_R0076 - 23S ribosomal RNA
2719183 2719258 - 76 92112136 Csal_R0077 - 02 Ala tRNA
2719380 2719456 - 77 92112136 Csal_R0078 - 14 Ile tRNA
2719591 2721064 - 1474 92112136 Csal_R0079 - 16S ribosomal RNA
2875011 2875087 + 77 92112136 Csal_R0080 - 11 Arg tRNA
3160950 3161036 - 87 92112136 Csal_R0081 - 15 Leu tRNA
3375098 3375174 + 77 92112136 Csal_R0082 - 16 Met tRNA
3392848 3392963 - 116 92112136 Csal_R0083 - 5S ribosomal RNA
3393066 3395962 - 2897 92112136 Csal_R0084 - 23S ribosomal RNA
3396214 3396289 - 76 92112136 Csal_R0085 - 02 Ala tRNA
3396453 3396529 - 77 92112136 Csal_R0086 - 14 Ile tRNA
3396670 3398143 - 1474 92112136 Csal_R0087 - 16S ribosomal RNA
3427948 3428024 - 77 92112136 Csal_R0088 - 16 Met tRNA
3428132 3428218 - 87 92112136 Csal_R0089 - 15 Leu tRNA
3553307 3553383 - 77 92112136 Csal_R0090 - 11 Arg tRNA
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