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   LOCUS       NC_007958            4892717 bp    DNA     circular BCT 14-APR-2006
   DEFINITION  Rhodopseudomonas palustris BisB5, complete genome.
   ACCESSION   NC_007958
   VERSION     NC_007958.1  GI:91974482
   KEYWORDS    .
   SOURCE      Rhodopseudomonas palustris BisB5
     ORGANISM  Rhodopseudomonas palustris BisB5
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Rhodopseudomonas.
   REFERENCE   1  (bases 1 to 4892717)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
               Oda,Y., Harwood,C.S. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Rhodopseudomonas palustris BisB5
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4892717)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-APR-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4892717)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Lykidis,A.,
               Oda,Y., Harwood,C.S. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (14-MAR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000283.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000372
               Source DNA and bacteria available from Caroline S. Harwood
               (csh5@u.washington.edu)
               Contacts: Caroline S. Harwood (csh5@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
81952 82028 - 77 91974482 RPD_R0001 - 11 Arg tRNA
103759 103861 - 103 91974482 RPD_R0002 - SRP RNA; RNA component of signal recognition particle
198196 198282 + 87 91974482 RPD_R0003 - 15 Leu tRNA
212220 212295 - 76 91974482 RPD_R0004 - 02 Ala tRNA
307559 307635 - 77 91974482 RPD_R0006 - 11 Arg tRNA
379446 379530 - 85 91974482 RPD_R0007 - 15 Leu tRNA
403348 403467 - 120 91974482 RPD_R0008 - 5S ribosomal RNA
403572 406403 - 2832 91974482 RPD_R0009 - 23S ribosomal RNA
406806 406881 - 76 91974482 RPD_R0010 - 02 Ala tRNA
406915 406991 - 77 91974482 RPD_R0011 - 14 Ile tRNA
407217 408691 - 1475 91974482 RPD_R0012 - 16S ribosomal RNA
424369 424443 - 75 91974482 RPD_R0013 - 04 Glu tRNA
524502 524576 + 75 91974482 RPD_R0014 - 01 Gly tRNA
537564 537639 - 76 91974482 RPD_R0015 - 12 Thr tRNA
663698 663787 + 90 91974482 RPD_R0016 - 08 Ser tRNA
714109 714317 + 209 91974482 RPD_R0017 -
727425 727646 - 222 91974482 RPD_R0018 -
776811 776886 - 76 91974482 RPD_R0019 - 02 Ala tRNA
785607 785805 + 199 91974482 RPD_R0020 -
852454 852530 - 77 91974482 RPD_R0021 - 11 Arg tRNA
1026149 1026222 + 74 91974482 RPD_R0022 - 01 Gly tRNA
1171800 1171889 + 90 91974482 RPD_R0023 - 08 Ser tRNA
1410553 1410629 + 77 91974482 RPD_R0024 - 03 Pro tRNA
1620308 1620384 + 77 91974482 RPD_R0025 - 09 His tRNA
1629987 1630061 - 75 91974482 RPD_R0026 - Xaa tRNA
1676578 1676654 + 77 91974482 RPD_R0027 - 16 Met tRNA
1946441 1946529 - 89 91974482 RPD_R0028 -
1946531 1946621 - 91 91974482 RPD_R0029 -
2369307 2369382 + 76 91974482 RPD_R0030 - 10 Lys tRNA
2436981 2437051 + 71 91974482 RPD_R0031 - 08 Ser tRNA
2437685 2437791 + 107 91974482 RPD_R0032 -
2565609 2565817 - 209 91974482 RPD_R0033 -
2565965 2566040 - 76 91974482 RPD_R0034 - 19 Cys tRNA
2591019 2591234 - 216 91974482 RPD_R0035 -
2593935 2594143 + 209 91974482 RPD_R0036 -
2681517 2681606 - 90 91974482 RPD_R0037 - 08 Ser tRNA
2689809 2689902 - 94 91974482 RPD_R0038 - 08 Ser tRNA
2829215 2829289 - 75 91974482 RPD_R0039 - 04 Glu tRNA
2833690 2833766 + 77 91974482 RPD_R0040 - 03 Pro tRNA
2850410 2850486 - 77 91974482 RPD_R0041 - 11 Arg tRNA
2884542 2884615 + 74 91974482 RPD_R0042 - 19 Cys tRNA
2886320 2886394 - 75 91974482 RPD_R0043 - 07 Asn tRNA
2922258 2922333 - 76 91974482 RPD_R0044 - 10 Lys tRNA
3003929 3004006 + 78 91974482 RPD_R0045 - 03 Pro tRNA
3216567 3216643 - 77 91974482 RPD_R0046 - 06 Asp tRNA
3219206 3219282 + 77 91974482 RPD_R0047 - 13 Val tRNA
3226277 3226361 - 85 91974482 RPD_R0048 - 15 Leu tRNA
3255793 3256000 - 208 91974482 RPD_R0049 -
3256310 3256518 + 209 91974482 RPD_R0050 -
3259915 3260113 - 199 91974482 RPD_R0051 -
3427966 3428050 - 85 91974482 RPD_R0052 - 15 Leu tRNA
3446452 3446528 + 77 91974482 RPD_R0053 - 11 Arg tRNA
3553731 3553806 - 76 91974482 RPD_R0054 - 20 Trp tRNA
3563784 3563857 - 74 91974482 RPD_R0055 - 01 Gly tRNA
3585880 3585965 - 86 91974482 RPD_R0056 - 18 Tyr tRNA
3588448 3588522 - 75 91974482 RPD_R0057 - 12 Thr tRNA
3647447 3647533 - 87 91974482 RPD_R0058 - 15 Leu tRNA
3701577 3701650 + 74 91974482 RPD_R0059 - 05 Gln tRNA
3723648 3724002 + 355 91974482 RPD_R0060 - tmRNA
3783877 3784294 + 418 91974482 RPD_R0061 - RNA component of RNaseP
3812110 3812251 + 142 91974482 RPD_R0062 -
4091273 4091348 - 76 91974482 RPD_R0063 - 16 Met tRNA
4111391 4111465 + 75 91974482 RPD_R0064 - 13 Val tRNA
4407931 4408007 - 77 91974482 RPD_R0065 - 16 Met tRNA
4547019 4547138 - 120 91974482 RPD_R0066 - 5S ribosomal RNA
4547243 4550074 - 2832 91974482 RPD_R0067 - 23S ribosomal RNA
4550477 4550552 - 76 91974482 RPD_R0068 - 02 Ala tRNA
4550586 4550662 - 77 91974482 RPD_R0069 - 14 Ile tRNA
4550888 4552362 - 1475 91974482 RPD_R0070 - 16S ribosomal RNA
4739264 4739339 - 76 91974482 RPD_R0071 - 17 Phe tRNA
4747188 4747262 + 75 91974482 RPD_R0072 - 12 Thr tRNA
4760460 4760534 - 75 91974482 RPD_R0073 - 05 Gln tRNA
4820132 4820206 - 75 91974482 RPD_R0074 - 13 Val tRNA
4855579 4855783 + 205 91974482 RPD_R0075 -
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