LOCUS NC_007929 1827111 bp DNA circular BCT 03-MAY-2006 DEFINITION Lactobacillus salivarius subsp. salivarius UCC118, complete genome. ACCESSION NC_007929 VERSION NC_007929.1 GI:90960990 KEYWORDS . SOURCE Lactobacillus salivarius subsp. salivarius UCC118 ORGANISM Lactobacillus salivarius subsp. salivarius UCC118 Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus. REFERENCE 1 (bases 1 to 1827111) AUTHORS Claesson,M.J., Li,Y., Leahy,S., Canchaya,C., van Pijkeren,J.P., Cerdeno-Tarraga,A.M., Parkhill,J., Flynn,S., O'sullivan,G.C., Collins,J.K., Higgins,D., Shanahan,F., Fitzgerald,G.F., van Sinderen,D. and O'toole,P.W. TITLE From the Cover: Multireplicon genome architecture of Lactobacillus salivarius JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (17), 6718-6723 (2006) PUBMED 16617113 REFERENCE 2 (bases 1 to 1827111) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (01-APR-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1827111) AUTHORS Claesson,M.J., Li,Y., Leahy,S., Canchaya,C., van Pijkeren,J.P., Cerdeno-Tarraga,A.M., Parkhill,J., Flynn,S., O'Sullivan,G.C., Collins,J.K., Higgins,D.G., Shanahan,F., Fitzgerald,G.F., van Sinderen,D. and O'Toole,P.W. CONSRTM Alimentary Pharmabiotic Centre, University College Cork TITLE Direct Submission JOURNAL Submitted (16-DEC-2005) Department of Microbiology, Alimentary Pharmabiotic Centre, University College Cork, College Road, Cork, Ireland COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CP000233. COMPLETENESS: full length. Source DNA is available from Eva McArdle at Alimentary Pharmabiotic Centre (e.mcardle@ucc.ie).
Расположение РНК[]
Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|
74540 | 76056 | + | 1517 | 90960990 | LSL_RNA001 | - | 16S ribosomal RNA |
76070 | 79029 | + | 2960 | 90960990 | LSL_RNA002 | - | 23S ribosomal RNA |
79274 | 79390 | + | 117 | 90960990 | LSL_RNA003 | - | 5S ribosomal RNA |
217778 | 219294 | + | 1517 | 90960990 | LSL_RNA004 | - | 16S ribosomal RNA |
219398 | 219472 | + | 75 | 90960990 | LSL_RNA119 | - | 14 Ile tRNA |
219504 | 219576 | + | 73 | 90960990 | LSL_RNA120 | - | 02 Ala tRNA |
219703 | 222482 | + | 2780 | 90960990 | LSL_RNA007 | - | 23S ribosomal RNA |
222727 | 222843 | + | 117 | 90960990 | LSL_RNA008 | - | 5S ribosomal RNA |
222849 | 222921 | + | 73 | 90960990 | LSL_RNA009 | - | 13 Val tRNA |
222925 | 222997 | + | 73 | 90960990 | LSL_RNA010 | - | 10 Lys tRNA |
223013 | 223098 | + | 86 | 90960990 | LSL_RNA011 | - | 15 Leu tRNA |
223107 | 223179 | + | 73 | 90960990 | LSL_RNA012 | - | 12 Thr tRNA |
223184 | 223255 | + | 72 | 90960990 | LSL_RNA013 | - | 01 Gly tRNA |
223265 | 223350 | + | 86 | 90960990 | LSL_RNA014 | - | 15 Leu tRNA |
223359 | 223432 | + | 74 | 90960990 | LSL_RNA015 | - | 11 Arg tRNA |
223480 | 223553 | + | 74 | 90960990 | LSL_RNA016 | - | 11 Arg tRNA |
223558 | 223631 | + | 74 | 90960990 | LSL_RNA017 | - | 03 Pro tRNA |
231540 | 231613 | + | 74 | 90960990 | LSL_RNA018 | - | 03 Pro tRNA |
268098 | 268170 | - | 73 | 90960990 | LSL_RNA019 | - | 12 Thr tRNA |
434853 | 436380 | + | 1528 | 90960990 | LSL_RNA021 | - | 16S ribosomal RNA |
436484 | 436558 | + | 75 | 90960990 | LSL_RNA121 | - | 14 Ile tRNA |
436590 | 436662 | + | 73 | 90960990 | LSL_RNA122 | - | 02 Ala tRNA |
436789 | 439568 | + | 2780 | 90960990 | LSL_RNA025 | - | 23S ribosomal RNA |
439813 | 439929 | + | 117 | 90960990 | LSL_RNA108 | - | 5S ribosomal RNA |
439935 | 440007 | + | 73 | 90960990 | LSL_RNA123 | - | 07 Asn tRNA |
440022 | 440111 | + | 90 | 90960990 | LSL_RNA030 | - | 08 Ser tRNA |
440126 | 440200 | + | 75 | 90960990 | LSL_RNA124 | - | 04 Glu tRNA |
440203 | 440275 | + | 73 | 90960990 | LSL_RNA032 | - | 13 Val tRNA |
440285 | 440357 | + | 73 | 90960990 | LSL_RNA125 | - | 06 Asp tRNA |
440383 | 440458 | + | 76 | 90960990 | LSL_RNA126 | - | 17 Phe tRNA |
440463 | 440545 | + | 83 | 90960990 | LSL_RNA035 | - | 18 Tyr tRNA |
440558 | 440631 | + | 74 | 90960990 | LSL_RNA036 | - | 20 Trp tRNA |
440638 | 440710 | + | 73 | 90960990 | LSL_RNA037 | - | 09 His tRNA |
440722 | 440793 | + | 72 | 90960990 | LSL_RNA038 | - | 05 Gln tRNA |
440803 | 440873 | + | 71 | 90960990 | LSL_RNA039 | - | 19 Cys tRNA |
440904 | 440988 | + | 85 | 90960990 | LSL_RNA040 | - | 15 Leu tRNA |
480393 | 481909 | + | 1517 | 90960990 | LSL_RNA041 | - | 16S ribosomal RNA |
481923 | 484882 | + | 2960 | 90960990 | LSL_RNA042 | - | 23S ribosomal RNA |
485127 | 485243 | + | 117 | 90960990 | LSL_RNA044 | - | 5S ribosomal RNA |
485249 | 485321 | + | 73 | 90960990 | LSL_RNA045 | - | 13 Val tRNA |
485325 | 485397 | + | 73 | 90960990 | LSL_RNA046 | - | 10 Lys tRNA |
485463 | 485535 | + | 73 | 90960990 | LSL_RNA047 | - | 12 Thr tRNA |
485540 | 485611 | + | 72 | 90960990 | LSL_RNA048 | - | 01 Gly tRNA |
485624 | 485709 | + | 86 | 90960990 | LSL_RNA049 | - | 15 Leu tRNA |
485718 | 485791 | + | 74 | 90960990 | LSL_RNA050 | - | 11 Arg tRNA |
485798 | 485871 | + | 74 | 90960990 | LSL_RNA051 | - | 03 Pro tRNA |
485896 | 485969 | + | 74 | 90960990 | LSL_RNA052 | - | 16 Met tRNA |
485986 | 486059 | + | 74 | 90960990 | LSL_RNA053 | - | 16 Met tRNA |
486100 | 486189 | + | 90 | 90960990 | LSL_RNA054 | - | 08 Ser tRNA |
486200 | 486273 | + | 74 | 90960990 | LSL_RNA055 | - | 16 Met tRNA |
486278 | 486350 | + | 73 | 90960990 | LSL_RNA056 | - | 06 Asp tRNA |
486360 | 486432 | + | 73 | 90960990 | LSL_RNA057 | - | 17 Phe tRNA |
486452 | 486522 | + | 71 | 90960990 | LSL_RNA058 | - | 01 Gly tRNA |
486531 | 486604 | + | 74 | 90960990 | LSL_RNA059 | - | 14 Ile tRNA |
486608 | 486695 | + | 88 | 90960990 | LSL_RNA060 | - | 08 Ser tRNA |
486700 | 486771 | + | 72 | 90960990 | LSL_RNA061 | - | 04 Glu tRNA |
486794 | 486867 | + | 74 | 90960990 | LSL_RNA062 | - | 16 Met tRNA |
486872 | 486944 | + | 73 | 90960990 | LSL_RNA063 | - | 06 Asp tRNA |
497858 | 497941 | - | 84 | 90960990 | LSL_RNA064 | - | 15 Leu tRNA |
567245 | 567318 | - | 74 | 90960990 | LSL_RNA065 | - | 11 Arg tRNA |
624842 | 624914 | + | 73 | 90960990 | LSL_RNA066 | - | 05 Gln tRNA |
723535 | 723605 | - | 71 | 90960990 | LSL_RNA067 | - | 01 Gly tRNA |
797253 | 797323 | + | 71 | 90960990 | LSL_RNA127 | - | Xaa tRNA |
825965 | 826052 | - | 88 | 90960990 | LSL_RNA068 | - | 08 Ser tRNA |
956549 | 956619 | - | 71 | 90960990 | LSL_RNA069 | - | 01 Gly tRNA |
1130195 | 1130267 | - | 73 | 90960990 | LSL_RNA070 | - | 04 Glu tRNA |
1203000 | 1203071 | - | 72 | 90960990 | LSL_RNA071 | - | Xaa tRNA |
1287765 | 1287850 | - | 86 | 90960990 | LSL_RNA072 | - | 15 Leu tRNA |
1295428 | 1295499 | - | 72 | 90960990 | LSL_RNA073 | - | 05 Gln tRNA |
1295503 | 1295588 | - | 86 | 90960990 | LSL_RNA074 | - | 18 Tyr tRNA |
1297458 | 1297783 | - | 326 | 90960990 | LSL_RNA075 | - | 5S ribosomal RNA |
1297819 | 1300778 | - | 2960 | 90960990 | LSL_RNA076 | - | 23S ribosomal RNA |
1300792 | 1302308 | - | 1517 | 90960990 | LSL_RNA077 | - | 16S ribosomal RNA |
1326134 | 1326207 | - | 74 | 90960990 | LSL_RNA078 | - | 11 Arg tRNA |
1406882 | 1406954 | - | 73 | 90960990 | LSL_RNA079 | - | 12 Thr tRNA |
1406970 | 1407041 | - | 72 | 90960990 | LSL_RNA080 | - | 04 Glu tRNA |
1407046 | 1407118 | - | 73 | 90960990 | LSL_RNA081 | - | 07 Asn tRNA |
1407124 | 1407240 | - | 117 | 90960990 | LSL_RNA082 | - | 5S ribosomal RNA |
1407481 | 1410440 | - | 2960 | 90960990 | LSL_RNA083 | - | 23S ribosomal RNA |
1410454 | 1411970 | - | 1517 | 90960990 | LSL_RNA084 | - | 16S ribosomal RNA |
1754142 | 1754217 | + | 76 | 90960990 | LSL_RNA085 | - | 10 Lys tRNA |
1763092 | 1763167 | + | 76 | 90960990 | LSL_RNA086 | - | 10 Lys tRNA |
1812695 | 1812782 | - | 88 | 90960990 | LSL_RNA087 | - | 15 Leu tRNA |
1812813 | 1812883 | - | 71 | 90960990 | LSL_RNA088 | - | 19 Cys tRNA |
1812908 | 1812979 | - | 72 | 90960990 | LSL_RNA089 | - | 05 Gln tRNA |
1812990 | 1813062 | - | 73 | 90960990 | LSL_RNA090 | - | 09 His tRNA |
1813069 | 1813142 | - | 74 | 90960990 | LSL_RNA091 | - | 20 Trp tRNA |
1813155 | 1813237 | - | 83 | 90960990 | LSL_RNA092 | - | 18 Tyr tRNA |
1813242 | 1813317 | - | 76 | 90960990 | LSL_RNA128 | - | 17 Phe tRNA |
1813343 | 1813415 | - | 73 | 90960990 | LSL_RNA129 | - | 06 Asp tRNA |
1813425 | 1813497 | - | 73 | 90960990 | LSL_RNA095 | - | 13 Val tRNA |
1813500 | 1813574 | - | 75 | 90960990 | LSL_RNA130 | - | 04 Glu tRNA |
1813589 | 1813678 | - | 90 | 90960990 | LSL_RNA097 | - | 08 Ser tRNA |
1813693 | 1813765 | - | 73 | 90960990 | LSL_RNA131 | - | 07 Asn tRNA |
1813771 | 1813887 | - | 117 | 90960990 | LSL_RNA099 | - | 5S ribosomal RNA |
1814132 | 1816911 | - | 2780 | 90960990 | LSL_RNA100 | - | 23S ribosomal RNA |
1817038 | 1817110 | - | 73 | 90960990 | LSL_RNA132 | - | 02 Ala tRNA |
1817142 | 1817216 | - | 75 | 90960990 | LSL_RNA133 | - | 14 Ile tRNA |
1817320 | 1818824 | - | 1505 | 90960990 | LSL_RNA103 | - | 16S ribosomal RNA |