Virtual Laboratory Wiki
Advertisement
   LOCUS       NC_007778            5331656 bp    DNA     circular BCT 30-MAR-2006
   DEFINITION  Rhodopseudomonas palustris HaA2, complete genome.
   ACCESSION   NC_007778
   VERSION     NC_007778.1  GI:86747127
   KEYWORDS    .
   SOURCE      Rhodopseudomonas palustris HaA2
     ORGANISM  Rhodopseudomonas palustris HaA2
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Rhodopseudomonas.
   REFERENCE   1  (bases 1 to 5331656)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I., Oda,Y.,
               Harwood,C.S. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Rhodopseudomonas palustris HaA2
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5331656)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (07-FEB-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5331656)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I., Oda,Y.,
               Harwood,C.S. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (20-JAN-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000250.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Caroline Harwood
               (csh5@u.washington.edu)
               Contact: Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
121051 121126 + 76 86747127 RPB_R0001 - 02 Ala tRNA
242172 242261 - 90 86747127 RPB_R0002 - 08 Ser tRNA
278861 278950 - 90 86747127 RPB_R0003 - 08 Ser tRNA
336013 336087 + 75 86747127 RPB_R0004 - 01 Gly tRNA
351131 351207 - 77 86747127 RPB_R0005 - Xaa tRNA
354073 354148 - 76 86747127 RPB_R0006 - 12 Thr tRNA
500043 500117 - 75 86747127 RPB_R0007 - 04 Glu tRNA
557873 557957 + 85 86747127 RPB_R0008 - 15 Leu tRNA
633139 633215 + 77 86747127 RPB_R0009 - 11 Arg tRNA
729941 730016 + 76 86747127 RPB_R0010 - 02 Ala tRNA
742456 742562 + 107 86747127 RPB_R0011 - RNA component of signal recognition particle
744308 744394 - 87 86747127 RPB_R0012 - 15 Leu tRNA
771267 771343 + 77 86747127 RPB_R0013 - 11 Arg tRNA
898097 898170 + 74 86747127 RPB_R0014 - 01 Gly tRNA
1059854 1059943 + 90 86747127 RPB_R0015 - 08 Ser tRNA
1294504 1294585 + 82 86747127 RPB_R0016 -
1294586 1294676 + 91 86747127 RPB_R0017 -
1301820 1301896 + 77 86747127 RPB_R0018 - 03 Pro tRNA
1661209 1661285 + 77 86747127 RPB_R0019 - 09 His tRNA
1711367 1711442 - 76 86747127 RPB_R0020 - Xaa tRNA
2225557 2225706 - 150 86747127 RPB_R0021 -
2253044 2253412 - 369 86747127 RPB_R0022 - RNA component of RNaseP
2311889 2312218 - 330 86747127 RPB_R0023 - tmRNA
2372364 2372437 - 74 86747127 RPB_R0024 - 05 Gln tRNA
2420157 2420243 + 87 86747127 RPB_R0025 - 15 Leu tRNA
2493652 2493726 + 75 86747127 RPB_R0026 - 12 Thr tRNA
2496079 2496164 + 86 86747127 RPB_R0027 - 18 Tyr tRNA
2603980 2604053 + 74 86747127 RPB_R0028 - 01 Gly tRNA
2616419 2616494 + 76 86747127 RPB_R0029 - 20 Trp tRNA
2715461 2715537 - 77 86747127 RPB_R0030 - 11 Arg tRNA
2726839 2726923 + 85 86747127 RPB_R0031 - 15 Leu tRNA
2939436 2939520 + 85 86747127 RPB_R0032 - 15 Leu tRNA
2946494 2946570 - 77 86747127 RPB_R0033 - 13 Val tRNA
2953560 2953636 + 77 86747127 RPB_R0034 - 06 Asp tRNA
3031532 3031609 + 78 86747127 RPB_R0035 - 03 Pro tRNA
3263143 3263218 + 76 86747127 RPB_R0036 - 10 Lys tRNA
3297966 3298040 + 75 86747127 RPB_R0037 - 07 Asn tRNA
3299403 3299476 - 74 86747127 RPB_R0038 - 19 Cys tRNA
3334358 3334434 + 77 86747127 RPB_R0039 - 11 Arg tRNA
3349909 3349985 - 77 86747127 RPB_R0040 - 03 Pro tRNA
3354193 3354267 + 75 86747127 RPB_R0041 - 04 Glu tRNA
3462484 3462577 + 94 86747127 RPB_R0042 - 08 Ser tRNA
3470486 3470575 + 90 86747127 RPB_R0043 - 08 Ser tRNA
3805275 3805350 - 76 86747127 RPB_R0044 - 10 Lys tRNA
4276466 4276571 + 106 86747127 RPB_R0045 -
4397101 4397177 - 77 86747127 RPB_R0046 - 16 Met tRNA
4456738 4456813 - 76 86747127 RPB_R0047 - 16 Met tRNA
4478622 4478696 + 75 86747127 RPB_R0048 - 13 Val tRNA
4479137 4479222 - 86 86747127 RPB_R0049 - 01 Gly tRNA
4685836 4685912 - 77 86747127 RPB_R0050 - 16 Met tRNA
4820570 4820684 - 115 86747127 RPB_R0051 - 5S ribosomal RNA
4820799 4823628 - 2830 86747127 RPB_R0052 - 23S ribosomal RNA
4824027 4824102 - 76 86747127 RPB_R0053 - 02 Ala tRNA
4824136 4824212 - 77 86747127 RPB_R0054 - 14 Ile tRNA
4824444 4825909 - 1466 86747127 RPB_R0055 - 16S ribosomal RNA
4930083 4930158 - 76 86747127 RPB_R0056 - 17 Phe tRNA
4941426 4941500 + 75 86747127 RPB_R0057 - 12 Thr tRNA
5041326 5041400 - 75 86747127 RPB_R0058 - 05 Gln tRNA
5102616 5102690 - 75 86747127 RPB_R0059 - 13 Val tRNA
5262228 5262304 + 77 86747127 RPB_R0060 - 11 Arg tRNA
Advertisement