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   LOCUS       NC_007520            2427734 bp    DNA     circular BCT 22-NOV-2006
   DEFINITION  Thiomicrospira crunogena XCL-2, complete genome.
   ACCESSION   NC_007520
   VERSION     NC_007520.2  GI:118139508
   KEYWORDS    .
   SOURCE      Thiomicrospira crunogena XCL-2
     ORGANISM  Thiomicrospira crunogena XCL-2
               Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales;
               Piscirickettsiaceae; Thiomicrospira.
   REFERENCE   1  (bases 1 to 2427734)
     AUTHORS   Scott,K.M., Sievert,S.M., Abril,F.N., Ball,L.A., Barrett,C.J.,
               Blake,R.A., Boller,A.J., Chain,P.S., Clark,J.A., Davis,C.R.,
               Detter,C., Do,K.F., Dobrinski,K.P., Faza,B.I., Fitzpatrick,K.A.,
               Freyermuth,S.K., Harmer,T.L., Hauser,L.J., Hugler,M., Kerfeld,C.A.,
               Klotz,M.G., Kong,W.W., Land,M., Lapidus,A., Larimer,F.W.,
               Longo,D.L., Lucas,S., Malfatti,S.A., Massey,S.E., Martin,D.D.,
               McCuddin,Z., Meyer,F., Moore,J.L., Ocampo,L.H., Paul,J.H.,
               Paulsen,I.T., Reep,D.K., Ren,Q., Ross,R.L., Sato,P.Y., Thomas,P.,
               Tinkham,L.E. and Zeruth,G.T.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     The Genome of Deep-Sea Vent Chemolithoautotroph Thiomicrospira
               crunogena XCL-2
     JOURNAL   (er) PLoS Biol. 4 (12), E383 (2006)
      PUBMED   17105352
   REFERENCE   2  (bases 1 to 2427734)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (01-NOV-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 2427734)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T.,
               Hammon,N., Israni,S., Pitluck,S., Schmutz,J., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Larimer,F., Land,M., Lykidis,A.
               and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (27-JUL-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000109.
               On Nov 17, 2006 this sequence version replaced gi:78484346.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Kathleen Scott
               (kscott@cas.usf.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
328455 328539 + 85 118139508 Tcr_R0001 - 18 Tyr tRNA
328562 328636 + 75 118139508 Tcr_R0002 - 01 Gly tRNA
328707 328782 + 76 118139508 Tcr_R0003 - 12 Thr tRNA
330124 330200 + 77 118139508 Tcr_R0004 - 20 Trp tRNA
442921 442995 + 75 118139508 Tcr_R0005 - 05 Gln tRNA
446774 446850 + 77 118139508 Tcr_R0006 - 16 Met tRNA
590549 590624 + 76 118139508 Tcr_R0007 - 07 Asn tRNA
591784 591898 + 115 118139508 Tcr_R0008 - SRP RNA; RNA component of signal recognitionparticle
617698 617774 + 77 118139508 Tcr_R0009 - 03 Pro tRNA
627897 628208 + 312 118139508 Tcr_R0010 - RNA component of RNaseP
793925 794000 - 76 118139508 Tcr_R0011 - 09 His tRNA
794029 794105 - 77 118139508 Tcr_R0012 - 11 Arg tRNA
794167 794243 - 77 118139508 Tcr_R0013 - 03 Pro tRNA
839313 839403 + 91 118139508 Tcr_R0014 - 08 Ser tRNA
839535 839611 + 77 118139508 Tcr_R0015 - 11 Arg tRNA
889277 889361 + 85 118139508 Tcr_R0016 - 15 Leu tRNA
904217 904293 + 77 118139508 Tcr_R0017 - 16 Met tRNA
980488 980563 + 76 118139508 Tcr_R0018 - 10 Lys tRNA
980611 980686 + 76 118139508 Tcr_R0019 - 10 Lys tRNA
1243378 1243452 + 75 118139508 Tcr_R0020 - 01 Gly tRNA
1243457 1243530 + 74 118139508 Tcr_R0021 - 19 Cys tRNA
1243584 1243670 + 87 118139508 Tcr_R0022 - 15 Leu tRNA
1288577 1288652 + 76 118139508 Tcr_R0023 - 13 Val tRNA
1288670 1288746 + 77 118139508 Tcr_R0024 - 06 Asp tRNA
1288784 1288859 + 76 118139508 Tcr_R0025 - 13 Val tRNA
1288898 1288974 + 77 118139508 Tcr_R0026 - 06 Asp tRNA
1331880 1331955 - 76 118139508 Tcr_R0027 - 04 Glu tRNA
1332058 1332132 - 75 118139508 Tcr_R0028 - 01 Gly tRNA
1332137 1332212 - 76 118139508 Tcr_R0029 - 04 Glu tRNA
1332325 1332400 - 76 118139508 Tcr_R0030 - 02 Ala tRNA
1469945 1470021 - 77 118139508 Tcr_R0031 - 13 Val tRNA
1470038 1470124 - 87 118139508 Tcr_R0032 - 15 Leu tRNA
1520762 1521116 + 355 118139508 Tcr_R0033 - tmRNA
1631987 1632101 - 115 118139508 Tcr_R0034 - 5S ribosomal RNA
1632269 1635129 - 2861 118139508 Tcr_R0035 - 23S ribosomal RNA
1635606 1635681 - 76 118139508 Tcr_R0036 - 02 Ala tRNA
1635755 1635831 - 77 118139508 Tcr_R0037 - 14 Ile tRNA
1635964 1637454 - 1491 118139508 Tcr_R0038 - 16S ribosomal RNA
1737521 1737612 - 92 118139508 Tcr_R0039 - 08 Ser tRNA
1880915 1881005 - 91 118139508 Tcr_R0040 - 08 Ser tRNA
1949799 1949913 - 115 118139508 Tcr_R0041 - 5S ribosomal RNA
1950081 1952941 - 2861 118139508 Tcr_R0042 - 23S ribosomal RNA
1953417 1953492 - 76 118139508 Tcr_R0043 - 02 Ala tRNA
1953566 1953642 - 77 118139508 Tcr_R0044 - 14 Ile tRNA
1953775 1955265 - 1491 118139508 Tcr_R0045 - 16S ribosomal RNA
1981549 1981625 - 77 118139508 Tcr_R0046 - 16 Met tRNA
2038693 2038767 - 75 118139508 Tcr_R0047 - 11 Arg tRNA
2134366 2134441 - 76 118139508 Tcr_R0048 - 12 Thr tRNA
2136089 2136203 - 115 118139508 Tcr_R0049 - 5S ribosomal RNA
2136371 2139231 - 2861 118139508 Tcr_R0050 - 23S ribosomal RNA
2139707 2139782 - 76 118139508 Tcr_R0051 - 02 Ala tRNA
2139856 2139932 - 77 118139508 Tcr_R0052 - 14 Ile tRNA
2140065 2141555 - 1491 118139508 Tcr_R0053 - 16S ribosomal RNA
2345497 2345572 + 76 118139508 Tcr_R0054 - 17 Phe tRNA
2345610 2345693 + 84 118139508 Tcr_R0055 - 15 Leu tRNA
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