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   LOCUS       NC_007406            3402093 bp    DNA     circular BCT 19-OCT-2006
   DEFINITION  Nitrobacter winogradskyi Nb-255, complete genome.
   ACCESSION   NC_007406
   VERSION     NC_007406.1  GI:75674199
   KEYWORDS    .
   SOURCE      Nitrobacter winogradskyi Nb-255
     ORGANISM  Nitrobacter winogradskyi Nb-255
               Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
               Bradyrhizobiaceae; Nitrobacter.
   REFERENCE   1  (bases 1 to 3402093)
     AUTHORS   Starkenburg,S.R., Chain,P.S., Sayavedra-Soto,L.A., Hauser,L.,
               Land,M.L., Larimer,F.W., Malfatti,S.A., Klotz,M.G., Bottomley,P.J.,
               Arp,D.J. and Hickey,W.J.
     TITLE     Genome sequence of the chemolithoautotrophic nitrite-oxidizing
               bacterium Nitrobacter winogradskyi Nb-255
     JOURNAL   Appl. Environ. Microbiol. 72 (3), 2050-2063 (2006)
      PUBMED   16517654
   REFERENCE   2  (bases 1 to 3402093)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyripides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Nitrobacter winogradskyi Nb-255
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 3402093)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-SEP-2005) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 3402093)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C.,
               Glavina,T., Hammon,N., Israni,S., Pitluck,S., Chain,P.,
               Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M.,
               Hauser,L., Kyripides,N., Lykidis,A. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (01-SEP-2005) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000115.
               URL -- http://www.jgi.doe.gov
               Source DNA and bacteria available from Dan Arp (arpd@bcc.orst.edu)
               Whole genome sequencing and draft assembly at JGI-PGF
               Finishing done by JGI-LLNL
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Contacts: Paul Richardson (microbes@cuba.jgi-psf.org)
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
87473 87547 - 75 75674199 Nwi_R0001 - 01 Gly tRNA
167120 167193 + 74 75674199 Nwi_R0002 - 01 Gly tRNA
194684 194770 + 87 75674199 Nwi_R0003 - 15 Leu tRNA
241612 241687 + 76 75674199 Nwi_R0004 - 02 Ala tRNA
274519 274593 - 75 75674199 Nwi_R0005 - 12 Thr tRNA
310616 310691 - 76 75674199 Nwi_R0006 - 17 Phe tRNA
416069 416171 + 103 75674199 Nwi_R0007 - SRP RNA; RNA component of signal recognitionparticle
494086 494175 - 90 75674199 Nwi_R0008 - 08 Ser tRNA
512678 512754 + 77 75674199 Nwi_R0009 - 11 Arg tRNA
533217 533292 + 76 75674199 Nwi_R0010 - 12 Thr tRNA
535345 535420 - 76 75674199 Nwi_R0011 - 02 Ala tRNA
589505 589580 + 76 75674199 Nwi_R0012 - 16 Met tRNA
638302 639791 + 1490 75674199 Nwi_R0013 - 16S ribosomal RNA
639999 640075 + 77 75674199 Nwi_R0014 - 14 Ile tRNA
640108 640183 + 76 75674199 Nwi_R0015 - 02 Ala tRNA
640614 643442 + 2829 75674199 Nwi_R0016 - 23S ribosomal RNA
643504 643618 + 115 75674199 Nwi_R0017 - 5S ribosomal RNA
684778 684854 + 77 75674199 Nwi_R0018 - 16 Met tRNA
718800 718874 + 75 75674199 Nwi_R0019 - 05 Gln tRNA
826066 826150 - 85 75674199 Nwi_R0020 - 15 Leu tRNA
915544 915620 + 77 75674199 Nwi_R0021 - 16 Met tRNA
1113523 1113599 + 77 75674199 Nwi_R0022 - 09 His tRNA
1377955 1378028 + 74 75674199 Nwi_R0023 - 05 Gln tRNA
1475662 1475737 - 76 75674199 Nwi_R0024 - 20 Trp tRNA
1533855 1533932 + 78 75674199 Nwi_R0025 - 03 Pro tRNA
1619556 1619645 + 90 75674199 Nwi_R0026 - 08 Ser tRNA
1652754 1652827 - 74 75674199 Nwi_R0027 - 19 Cys tRNA
1682382 1682458 + 77 75674199 Nwi_R0028 - 11 Arg tRNA
1709371 1709448 + 78 75674199 Nwi_R0029 - 11 Arg tRNA
1755655 1755731 - 77 75674199 Nwi_R0030 - 03 Pro tRNA
1759786 1759860 + 75 75674199 Nwi_R0031 - 04 Glu tRNA
1890319 1890403 - 85 75674199 Nwi_R0032 - 15 Leu tRNA
1906243 1906319 + 77 75674199 Nwi_R0033 - 11 Arg tRNA
1951048 1951122 + 75 75674199 Nwi_R0034 - 07 Asn tRNA
1962421 1962496 + 76 75674199 Nwi_R0035 - 10 Lys tRNA
2073336 2073412 - 77 75674199 Nwi_R0036 - 06 Asp tRNA
2078266 2078342 + 77 75674199 Nwi_R0037 - 13 Val tRNA
2085537 2085621 - 85 75674199 Nwi_R0038 - 15 Leu tRNA
2121035 2121128 + 94 75674199 Nwi_R0039 - 08 Ser tRNA
2244358 2244431 - 74 75674199 Nwi_R0040 - 01 Gly tRNA
2246251 2246336 + 86 75674199 Nwi_R0041 - 18 Tyr tRNA
2253607 2253681 + 75 75674199 Nwi_R0042 - 12 Thr tRNA
2381182 2381270 - 89 75674199 Nwi_R0043 - 15 Leu tRNA
2555231 2555306 - 76 75674199 Nwi_R0044 - 10 Lys tRNA
2573201 2573521 + 321 75674199 Nwi_R0045 - tmRNA
2654247 2654321 + 75 75674199 Nwi_R0046 - 04 Glu tRNA
2671615 2671689 + 75 75674199 Nwi_R0047 - Xaa tRNA
2672041 2672113 - 73 75674199 Nwi_R0048 - Xaa tRNA
2681975 2682360 + 386 75674199 Nwi_R0049 - RNA component of RNaseP
2928541 2928617 - 77 75674199 Nwi_R0050 - 03 Pro tRNA
3069030 3069119 - 90 75674199 Nwi_R0051 - 08 Ser tRNA
3180981 3181055 - 75 75674199 Nwi_R0052 - 13 Val tRNA
3259630 3259704 + 75 75674199 Nwi_R0053 - 13 Val tRNA
3342499 3342575 + 77 75674199 Nwi_R0054 - 11 Arg tRNA
3397654 3397730 - 77 75674199 Nwi_R0055 - 11 Arg tRNA
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