LOCUS NC_006155 4744671 bp DNA circular BCT 26-JUN-2007
DEFINITION Yersinia pseudotuberculosis IP 32953, complete genome.
ACCESSION NC_006155
VERSION NC_006155.1 GI:51594359
KEYWORDS complete genome.
SOURCE Yersinia pseudotuberculosis IP 32953
ORGANISM Yersinia pseudotuberculosis IP 32953
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Yersinia.
REFERENCE 1 (bases 1 to 4744671)
AUTHORS Chain,P.S., Carniel,E., Larimer,F.W., Lamerdin,J., Stoutland,P.O.,
Regala,W.M., Georgescu,A.M., Vergez,L.M., Land,M.L., Motin,V.L.,
Brubaker,R.R., Fowler,J., Hinnebusch,J., Marceau,M., Medigue,C.,
Simonet,M., Chenal-Francisque,V., Souza,B., Dacheux,D.,
Elliott,J.M., Derbise,A., Hauser,L.J. and Garcia,E.
TITLE Insights into the evolution of Yersinia pestis through whole-genome
comparison with Yersinia pseudotuberculosis
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (38), 13826-13831 (2004)
PUBMED 15358858
REFERENCE 2 (bases 1 to 4744671)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (30-AUG-2004) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 4744671)
AUTHORS Chain,P.S.G., Carniel,E., Garcia,E. and Larimer,F.W.
TITLE Direct Submission
JOURNAL Submitted (08-FEB-2004) Biology and Biotechnology Research Program,
Lawrence Livermore National Laboratory, Livermore, CA 94550 USA,
Yersinia Research Unit, Institute Pasteur, 75724 Paris Cedex 15,
France, and the Genome Analysis Group, Oak Ridge National
Laboratory, Oak Ridge, TN 37831 USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from BX936398.
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 12249 | 13794 | + | 1546 | 51594359 | YPTB_RNA_93 | - | 16S ribosomal RNA |
| 13928 | 14003 | + | 76 | 51594359 | YPTB_RNA_1 | - | 04 Glu tRNA |
| 14256 | 17162 | + | 2907 | 51594359 | YPTB_RNA_94 | - | 23S ribosomal RNA |
| 17271 | 17390 | + | 120 | 51594359 | YPTB_RNA_95 | - | 5S ribosomal RNA |
| 25940 | 26047 | + | 108 | 51594359 | YPTB_RNA_89 | - | spf Spot 42 RNA |
| 27205 | 27459 | + | 255 | 51594359 | YPTB_RNA_113 | - | regulatory RNA CsrC |
| 147319 | 147579 | + | 261 | 51594359 | YPTB_RNA_114 | - | Cobalamin riboswitch |
| 150806 | 152351 | + | 1546 | 51594359 | YPTB_RNA_96 | - | 16S ribosomal RNA |
| 152485 | 152560 | + | 76 | 51594359 | YPTB_RNA_2 | - | 04 Glu tRNA |
| 152813 | 155719 | + | 2907 | 51594359 | YPTB_RNA_97 | - | 23S ribosomal RNA |
| 155828 | 155947 | + | 120 | 51594359 | YPTB_RNA_98 | - | 5S ribosomal RNA |
| 156071 | 156147 | + | 77 | 51594359 | YPTB_RNA_3 | - | 06 Asp tRNA |
| 156156 | 156231 | + | 76 | 51594359 | YPTB_RNA_4 | - | 20 Trp tRNA |
| 216856 | 216932 | + | 77 | 51594359 | YPTB_RNA_5 | - | 11 Arg tRNA |
| 217016 | 217091 | + | 76 | 51594359 | YPTB_RNA_6 | - | 09 His tRNA |
| 217108 | 217194 | + | 87 | 51594359 | YPTB_RNA_7 | - | 15 Leu tRNA |
| 217270 | 217346 | + | 77 | 51594359 | YPTB_RNA_8 | - | 03 Pro tRNA |
| 320424 | 321970 | + | 1547 | 51594359 | YPTB_RNA_99 | - | 16S ribosomal RNA |
| 322070 | 322146 | + | 77 | 51594359 | YPTB_RNA_9 | - | 14 Ile tRNA |
| 322198 | 322273 | + | 76 | 51594359 | YPTB_RNA_10 | - | 02 Ala tRNA |
| 322492 | 325399 | + | 2908 | 51594359 | YPTB_RNA_100 | - | 23S ribosomal RNA |
| 325508 | 325627 | + | 120 | 51594359 | YPTB_RNA_101 | - | 5S ribosomal RNA |
| 330225 | 330300 | + | 76 | 51594359 | YPTB_RNA_11 | - | 12 Thr tRNA |
| 330319 | 330403 | + | 85 | 51594359 | YPTB_RNA_12 | - | 18 Tyr tRNA |
| 330553 | 330627 | + | 75 | 51594359 | YPTB_RNA_13 | - | 01 Gly tRNA |
| 330634 | 330709 | + | 76 | 51594359 | YPTB_RNA_14 | - | 12 Thr tRNA |
| 360682 | 362227 | + | 1546 | 51594359 | YPTB_RNA_102 | - | 16S ribosomal RNA |
| 362361 | 362436 | + | 76 | 51594359 | YPTB_RNA_15 | - | 04 Glu tRNA |
| 362689 | 365598 | + | 2910 | 51594359 | YPTB_RNA_103 | - | 23S ribosomal RNA |
| 365706 | 365825 | + | 120 | 51594359 | YPTB_RNA_104 | - | 5S ribosomal RNA |
| 470331 | 470406 | - | 76 | 51594359 | YPTB_RNA_85 | - | 17 Phe tRNA |
| 500424 | 500499 | + | 76 | 51594359 | YPTB_RNA_16 | - | 01 Gly tRNA |
| 500591 | 500666 | + | 76 | 51594359 | YPTB_RNA_17 | - | 01 Gly tRNA |
| 500734 | 500809 | + | 76 | 51594359 | YPTB_RNA_18 | - | 01 Gly tRNA |
| 562886 | 562972 | + | 87 | 51594359 | YPTB_RNA_19 | - | 15 Leu tRNA |
| 563033 | 563109 | + | 77 | 51594359 | YPTB_RNA_20 | - | 16 Met tRNA |
| 569847 | 570030 | - | 184 | 51594359 | YPTB_RNA_115 | - | SraG RNA |
| 626995 | 627079 | + | 85 | 51594359 | YPTB_RNA_21 | - | 15 Leu tRNA |
| 674169 | 674255 | - | 87 | 51594359 | YPTB_RNA_84 | - | 15 Leu tRNA |
| 674351 | 674437 | - | 87 | 51594359 | YPTB_RNA_83 | - | 15 Leu tRNA |
| 674534 | 674620 | - | 87 | 51594359 | YPTB_RNA_82 | - | 15 Leu tRNA |
| 994068 | 994160 | + | 93 | 51594359 | YPTB_RNA_22 | - | 08 Ser tRNA |
| 994169 | 994245 | + | 77 | 51594359 | YPTB_RNA_23 | - | 11 Arg tRNA |
| 994303 | 994379 | + | 77 | 51594359 | YPTB_RNA_24 | - | 11 Arg tRNA |
| 994459 | 994535 | + | 77 | 51594359 | YPTB_RNA_25 | - | 11 Arg tRNA |
| 994615 | 994686 | + | 72 | 51594359 | YPTB_RNA_26 | - | Xaa tRNA |
| 1018753 | 1020298 | + | 1546 | 51594359 | YPTB_RNA_105 | - | 16S ribosomal RNA |
| 1020398 | 1020474 | + | 77 | 51594359 | YPTB_RNA_27 | - | 14 Ile tRNA |
| 1020526 | 1020601 | + | 76 | 51594359 | YPTB_RNA_28 | - | 02 Ala tRNA |
| 1020820 | 1023726 | + | 2907 | 51594359 | YPTB_RNA_106 | - | 23S ribosomal RNA |
| 1023835 | 1023954 | + | 120 | 51594359 | YPTB_RNA_107 | - | 5S ribosomal RNA |
| 1175598 | 1175717 | + | 120 | 51594359 | YPTB_RNA_86 | - | SRP RNA |
| 1245199 | 1245275 | + | 77 | 51594359 | YPTB_RNA_29 | - | 11 Arg tRNA |
| 1334962 | 1335036 | - | 75 | 51594359 | YPTB_RNA_81 | - | 05 Gln tRNA |
| 1335042 | 1335118 | - | 77 | 51594359 | YPTB_RNA_80 | - | 16 Met tRNA |
| 1335151 | 1335225 | - | 75 | 51594359 | YPTB_RNA_79 | - | 05 Gln tRNA |
| 1335309 | 1335383 | - | 75 | 51594359 | YPTB_RNA_78 | - | 05 Gln tRNA |
| 1335413 | 1335497 | - | 85 | 51594359 | YPTB_RNA_77 | - | 15 Leu tRNA |
| 1335505 | 1335581 | - | 77 | 51594359 | YPTB_RNA_76 | - | 16 Met tRNA |
| 1359528 | 1359891 | - | 364 | 51594359 | YPTB_RNA_88 | - | tmRNA |
| 1386989 | 1387064 | + | 76 | 51594359 | YPTB_RNA_30 | - | 10 Lys tRNA |
| 1387092 | 1387167 | + | 76 | 51594359 | YPTB_RNA_31 | - | 10 Lys tRNA |
| 1387195 | 1387270 | + | 76 | 51594359 | YPTB_RNA_32 | - | 10 Lys tRNA |
| 1387298 | 1387373 | + | 76 | 51594359 | YPTB_RNA_33 | - | 10 Lys tRNA |
| 1387402 | 1387471 | + | 70 | 51594359 | YPTB_RNA_34 | - | 10 Lys tRNA |
| 1387569 | 1387638 | + | 70 | 51594359 | YPTB_RNA_35 | - | Xaa tRNA |
| 1387736 | 1387805 | + | 70 | 51594359 | YPTB_RNA_36 | - | 10 Lys tRNA |
| 1508762 | 1508903 | - | 142 | 51594359 | YPTB_RNA_91 | - | antisense RNA affecting ompF expression |
| 1510666 | 1510753 | + | 88 | 51594359 | YPTB_RNA_37 | - | 08 Ser tRNA |
| 1510759 | 1510834 | + | 76 | 51594359 | YPTB_RNA_38 | - | 12 Thr tRNA |
| 1543259 | 1543335 | - | 77 | 51594359 | YPTB_RNA_75 | - | 03 Pro tRNA |
| 1759383 | 1759470 | + | 88 | 51594359 | YPTB_RNA_39 | - | 08 Ser tRNA |
| 1949762 | 1949837 | - | 76 | 51594359 | YPTB_RNA_74 | - | 07 Asn tRNA |
| 1960828 | 1960903 | - | 76 | 51594359 | YPTB_RNA_73 | - | 07 Asn tRNA |
| 2014703 | 2014952 | - | 250 | 51594359 | YPTB_RNA_116 | - | SraC_RyeA RNA |
| 2014813 | 2014918 | + | 106 | 51594359 | YPTB_RNA_120 | - | RyeB RNA |
| 2090133 | 2090208 | + | 76 | 51594359 | YPTB_RNA_40 | - | 10 Lys tRNA |
| 2096657 | 2096732 | + | 76 | 51594359 | YPTB_RNA_41 | - | 01 Gly tRNA |
| 2096785 | 2096858 | + | 74 | 51594359 | YPTB_RNA_42 | - | 19 Cys tRNA |
| 2096869 | 2096954 | + | 86 | 51594359 | YPTB_RNA_43 | - | 15 Leu tRNA |
| 2249472 | 2249547 | - | 76 | 51594359 | YPTB_RNA_72 | - | 07 Asn tRNA |
| 2368848 | 2368937 | - | 90 | 51594359 | YPTB_RNA_71 | - | 08 Ser tRNA |
| 2376517 | 2376606 | - | 90 | 51594359 | YPTB_RNA_70 | - | 08 Ser tRNA |
| 2469384 | 2469468 | - | 85 | 51594359 | YPTB_RNA_69 | - | 18 Tyr tRNA |
| 2469534 | 2469618 | - | 85 | 51594359 | YPTB_RNA_68 | - | 18 Tyr tRNA |
| 2721115 | 2721191 | + | 77 | 51594359 | YPTB_RNA_44 | - | 13 Val tRNA |
| 2721251 | 2721327 | + | 77 | 51594359 | YPTB_RNA_45 | - | 13 Val tRNA |
| 2721497 | 2721573 | + | 77 | 51594359 | YPTB_RNA_46 | - | 13 Val tRNA |
| 2922674 | 2923011 | + | 338 | 51594359 | YPTB_RNA_117 | - | rne5 5' UTR element of RNaseE gene |
| 3129140 | 3129214 | - | 75 | 51594359 | YPTB_RNA_67 | - | 11 Arg tRNA |
| 3198555 | 3198630 | - | 76 | 51594359 | YPTB_RNA_66 | - | 10 Lys tRNA |
| 3198830 | 3198905 | - | 76 | 51594359 | YPTB_RNA_65 | - | 13 Val tRNA |
| 3198950 | 3199025 | - | 76 | 51594359 | YPTB_RNA_64 | - | 13 Val tRNA |
| 3199062 | 3199137 | - | 76 | 51594359 | YPTB_RNA_63 | - | 13 Val tRNA |
| 3201059 | 3201134 | + | 76 | 51594359 | YPTB_RNA_47 | - | 02 Ala tRNA |
| 3201212 | 3201287 | + | 76 | 51594359 | YPTB_RNA_48 | - | 02 Ala tRNA |
| 3404860 | 3405024 | + | 165 | 51594359 | YPTB_RNA_118 | - | tke1 RNA |
| 3497889 | 3497965 | - | 77 | 51594359 | YPTB_RNA_62 | - | 06 Asp tRNA |
| 3505348 | 3505424 | - | 77 | 51594359 | YPTB_RNA_61 | - | 06 Asp tRNA |
| 3505548 | 3505667 | - | 120 | 51594359 | YPTB_RNA_108 | - | 5S ribosomal RNA |
| 3505775 | 3508681 | - | 2907 | 51594359 | YPTB_RNA_109 | - | 23S ribosomal RNA |
| 3508934 | 3509009 | - | 76 | 51594359 | YPTB_RNA_60 | - | 04 Glu tRNA |
| 3509143 | 3510688 | - | 1546 | 51594359 | YPTB_RNA_110 | - | 16S ribosomal RNA |
| 3550076 | 3550357 | - | 282 | 51594359 | YPTB_RNA_90 | - | regulatory RNA csrB |
| 3562220 | 3562296 | + | 77 | 51594359 | YPTB_RNA_49 | - | 16 Met tRNA |
| 3562464 | 3562540 | + | 77 | 51594359 | YPTB_RNA_50 | - | 16 Met tRNA |
| 3562601 | 3562677 | + | 77 | 51594359 | YPTB_RNA_51 | - | 16 Met tRNA |
| 3719418 | 3719491 | - | 74 | 51594359 | YPTB_RNA_59 | - | 01 Gly tRNA |
| 3749921 | 3750102 | + | 182 | 51594359 | YPTB_RNA_92 | - | 6S RNA |
| 3809995 | 3810070 | + | 76 | 51594359 | YPTB_RNA_52 | - | 17 Phe tRNA |
| 4043205 | 4043394 | - | 190 | 51594359 | YPTB_RNA_119 | - | RFN element; FMN riboswitch |
| 4062048 | 4062124 | + | 77 | 51594359 | YPTB_RNA_53 | - | 16 Met tRNA |
| 4157130 | 4157504 | - | 375 | 51594359 | YPTB_RNA_87 | - | RNA component of RNaseP |
| 4367448 | 4367567 | - | 120 | 51594359 | YPTB_r01 | - | 5S ribosomal RNA |
| 4367606 | 4367681 | - | 76 | 51594359 | YPTB_RNA_58 | - | 12 Thr tRNA |
| 4367695 | 4367814 | - | 120 | 51594359 | YPTB_RNA_111 | - | 5S ribosomal RNA |
| 4367922 | 4370828 | - | 2907 | 51594359 | YPTB_RNA_112 | - | 23S ribosomal RNA |
| 4371047 | 4371122 | - | 76 | 51594359 | YPTB_RNA_57 | - | 02 Ala tRNA |
| 4371174 | 4371250 | - | 77 | 51594359 | YPTB_RNA_56 | - | 14 Ile tRNA |
| 4371350 | 4372891 | - | 1542 | 51594359 | YPTB_RNA_111.1 | - | 16S ribosomal RNA |
| 4593512 | 4593588 | - | 77 | 51594359 | YPTB_RNA_55 | - | 03 Pro tRNA |
| 4637882 | 4637972 | - | 91 | 51594359 | YPTB_RNA_54 | - | Sec tRNA |