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   LOCUS       NC_005945            5228663 bp    DNA     circular BCT 03-APR-2006
   DEFINITION  Bacillus anthracis str. Sterne, complete genome.
   ACCESSION   NC_005945
   VERSION     NC_005945.1  GI:49183039
   KEYWORDS    .
   SOURCE      Bacillus anthracis str. Sterne
     ORGANISM  Bacillus anthracis str. Sterne
               Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus
               cereus group.
   REFERENCE   1  (bases 1 to 5228663)
     AUTHORS   Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Han,C.,
               Hill,K., Hitchcock,P., Jackson,P., Keim,P., Longmire,J., Lucas,S.,
               Okinaka,R., Richardson,P., Rubin,E. and Tice,H.
     TITLE     Complete genome sequence of Bacillus anthracis Sterne
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5228663)
     AUTHORS   .
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (11-SEP-2004) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5228663)
     AUTHORS   Brettin,T.S., Bruce,D., Challacombe,J.F., Gilna,P., Han,C.,
               Hill,K., Hitchcock,P., Jackson,P., Keim,P., Longmire,J., Lucas,S.,
               Okinaka,R., Richardson,P., Rubin,E. and Tice,H.
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JAN-2004) Joint Genome Institute, Department of
               Energy, 2800 Mitchell Drive, Walnut Creek, CA 94598, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE017225.
               The Sterne strain of Bacillus anthracis is lacking the plasmid
               pXO2, resulting in an avirulent phenotype that maintains the main
               anthrax toxin. Prevention of anthrax in cattle can be accomplished
               by vaccination with living spores of the Sterne strain.  Most
               livestock vaccines in use throughout the world are derivatives of
               the live spore vaccine formulated by Sterne in 1937 and still use
               descendants of his strain 34F2 (Anthrax: the disease in relation to
               vaccines. Hambleton, P, Carnabm J, and Melling J. Vaccine 1984
               2:125-132 and Anthrax vaccines: past, present and future. Turnbull,
               PC. Vaccine 1991 9(8):533-539).   Plasmid and fosmid libraries were
               prepared at the Joint Genome Institute in Los Alamos (JGI-LANL),
               NM. Shotgun sequencing was performed at the JGI Production Genomics
               Facility (JGI-PGF) in Walnut Creek, CA. to a coverage of 16x.
               Finishing was performed at JGI-LANL starting with 39 contigs and 15
               scaffolds. Repetitive regions were identified, assembled and
               finished individually using a local software package called RepFin.
               Twenty four gaps were closed with primer walks and 15 by PCR. Gene
               predictions were performed using Glimmer and tRNAs were identified
               using tRNAScan-SE. Basic analysis of the gene predictions was
               performed by searching the coding sequence against the PFam,
               BLOCKS, and Prodom databases. For the most part, gene definitions
               were transferred directly from the TIGR Bacillus anthracis Ames
               GenBank records using a bi-directional best hit mapping between the
               two genomes. A total of 5415 features have been annotated on the
               sequence record.
               COMPLETENESS: full length.


Расположение РНК

Начало Конец Направление Длина PID Ген COG Комментарий
9336 10845 + 1510 49183039 rRNA-16s-1 - 16S ribosomal RNA
10993 11072 + 80 49183039 tRNA-Ile-2 - 14 Ile tRNA
11078 11156 + 79 49183039 tRNA-Ala-2 - 02 Ala tRNA
11248 14158 + 2911 49183039 rRNA-23s-1 - 23S ribosomal RNA
14204 14322 + 119 49183039 rRNA-5s-1 - 5S ribosomal RNA
21770 21865 + 96 49183039 tRNA-Ser-1 - 08 Ser tRNA
29130 30639 + 1510 49183039 rRNA-16s-2 - 16S ribosomal RNA
30787 30866 + 80 49183039 tRNA-Ile-4 - 14 Ile tRNA
30872 30950 + 79 49183039 tRNA-Ala-4 - 02 Ala tRNA
31042 33952 + 2911 49183039 rRNA-23s-2 - 23S ribosomal RNA
33998 34116 + 119 49183039 rRNA-5s-2 - 5S ribosomal RNA
64426 64502 + 77 49183039 tRNA-Met-6 - 16 Met tRNA
64513 64587 + 75 49183039 tRNA-Glu-5 - 04 Glu tRNA
82452 83961 + 1510 49183039 rRNA-16s-3 - 16S ribosomal RNA
84197 87047 + 2851 49183039 rRNA-23s-3 - 23S ribosomal RNA
87094 87212 + 119 49183039 rRNA-5s-3 - 5S ribosomal RNA
145516 147025 + 1510 49183039 rRNA-16s-4 - 16S ribosomal RNA
147201 150111 + 2911 49183039 rRNA-23s-4 - 23S ribosomal RNA
150195 150313 + 119 49183039 rRNA-5s-4 - 5S ribosomal RNA
150320 150397 + 78 49183039 tRNA-Asn-4 - 07 Asn tRNA
150399 150474 + 76 49183039 tRNA-Thr-5 - 12 Thr tRNA
150496 150573 + 78 49183039 tRNA-Glu-4 - 04 Glu tRNA
150576 150654 + 79 49183039 tRNA-Val-5 - 13 Val tRNA
150669 150755 + 87 49183039 tRNA-Tyr-2 - 18 Tyr tRNA
150818 150895 + 78 49183039 tRNA-Gln-4 - 05 Gln tRNA
150898 150976 + 79 49183039 tRNA-Lys-4 - 10 Lys tRNA
150979 151053 + 75 49183039 tRNA-Gly-3 - 01 Gly tRNA
151061 151136 + 76 49183039 tRNA-Ala-1 - 02 Ala tRNA
245022 245099 + 78 49183039 tRNA-Asn-1 - 07 Asn tRNA
245100 245193 + 94 49183039 tRNA-Ser-7 - 08 Ser tRNA
245199 245276 + 78 49183039 tRNA-Glu-7 - 04 Glu tRNA
245278 245356 + 79 49183039 tRNA-Val-3 - 13 Val tRNA
245400 245478 + 79 49183039 tRNA-Asp-3 - 06 Asp tRNA
245564 245641 + 78 49183039 tRNA-Gln-2 - 05 Gln tRNA
245644 245719 + 76 49183039 tRNA-Lys-2 - 10 Lys tRNA
245734 245822 + 89 49183039 tRNA-Leu-4 - 15 Leu tRNA
245915 245994 + 80 49183039 tRNA-Arg-2 - 11 Arg tRNA
245996 246075 + 80 49183039 tRNA-Pro-1 - 03 Pro tRNA
246074 246147 + 74 49183039 tRNA-Gly-6 - 01 Gly tRNA
246248 247757 + 1510 49183039 rRNA-16s-5 - 16S ribosomal RNA
247933 250843 + 2911 49183039 rRNA-23s-5 - 23S ribosomal RNA
250890 251008 + 119 49183039 rRNA-5s-5 - 5S ribosomal RNA
251018 251097 + 80 49183039 tRNA-Met-7 - 16 Met tRNA
251098 251176 + 79 49183039 tRNA-Asp-4 - 06 Asp tRNA
266827 268336 + 1510 49183039 rRNA-16s-6 - 16S ribosomal RNA
268512 271422 + 2911 49183039 rRNA-23s-6 - 23S ribosomal RNA
271469 271587 + 119 49183039 rRNA-5s-6 - 5S ribosomal RNA
280125 281634 + 1510 49183039 rRNA-16s-7 - 16S ribosomal RNA
281810 284720 + 2911 49183039 rRNA-23s-7 - 23S ribosomal RNA
284768 284886 + 119 49183039 rRNA-5s-7 - 5S ribosomal RNA
290098 291607 + 1510 49183039 rRNA-16s-8 - 16S ribosomal RNA
291783 294693 + 2911 49183039 rRNA-23s-8 - 23S ribosomal RNA
294741 294859 + 119 49183039 rRNA-5s-8 - 5S ribosomal RNA
532506 534014 + 1509 49183039 rRNA-16s-9 - 16S ribosomal RNA
534183 537093 + 2911 49183039 rRNA-23s-9 - 23S ribosomal RNA
537191 537309 + 119 49183039 rRNA-5s-9 - 5S ribosomal RNA
537315 537392 + 78 49183039 tRNA-Asn-5 - 07 Asn tRNA
537392 537486 + 95 49183039 tRNA-Ser-6 - 08 Ser tRNA
537501 537578 + 78 49183039 tRNA-Glu-2 - 04 Glu tRNA
537581 537659 + 79 49183039 tRNA-Val-6 - 13 Val tRNA
537681 537760 + 80 49183039 tRNA-Met-3 - 16 Met tRNA
537761 537839 + 79 49183039 tRNA-Asp-6 - 06 Asp tRNA
537846 537924 + 79 49183039 tRNA-Phe-4 - 17 Phe tRNA
537940 538018 + 79 49183039 tRNA-Thr-4 - 12 Thr tRNA
538026 538112 + 87 49183039 tRNA-Tyr-1 - 18 Tyr tRNA
538117 538193 + 77 49183039 tRNA-Trp-2 - 20 Trp tRNA
538210 538288 + 79 49183039 tRNA-His-2 - 09 His tRNA
538349 538426 + 78 49183039 tRNA-Gln-1 - 05 Gln tRNA
538429 538506 + 78 49183039 tRNA-Gly-8 - 01 Gly tRNA
538518 538591 + 74 49183039 tRNA-Cys-1 - 19 Cys tRNA
538599 538686 + 88 49183039 tRNA-Leu-5 - 15 Leu tRNA
543114 543190 + 77 49183039 tRNA-Gly-1 - 01 Gly tRNA
741460 742969 + 1510 49183039 rRNA-16s-10 - 16S ribosomal RNA
743145 746055 + 2911 49183039 rRNA-23s-10 - 23S ribosomal RNA
746154 746272 + 119 49183039 rRNA-5s-10 - 5S ribosomal RNA
746275 746353 + 79 49183039 tRNA-Val-4 - 13 Val tRNA
746362 746439 + 78 49183039 tRNA-Gln-3 - 05 Gln tRNA
746441 746519 + 79 49183039 tRNA-Lys-1 - 10 Lys tRNA
746531 746614 + 84 49183039 tRNA-Leu-3 - 15 Leu tRNA
746641 746718 + 78 49183039 tRNA-Gly-5 - 01 Gly tRNA
746732 746823 + 92 49183039 tRNA-Leu-1 - 15 Leu tRNA
746824 746900 + 77 49183039 tRNA-Arg-3 - 11 Arg tRNA
746908 746984 + 77 49183039 tRNA-Pro-2 - 03 Pro tRNA
746998 747073 + 76 49183039 tRNA-Ala-3 - 02 Ala tRNA
747091 747186 + 96 49183039 tRNA-Ser-2 - 08 Ser tRNA
747238 747333 + 96 49183039 tRNA-Ser-5 - 08 Ser tRNA
747351 747430 + 80 49183039 tRNA-Met-2 - 16 Met tRNA
747432 747510 + 79 49183039 tRNA-Asp-5 - 06 Asp tRNA
747516 747594 + 79 49183039 tRNA-Phe-3 - 17 Phe tRNA
747601 747676 + 76 49183039 tRNA-Thr-1 - 12 Thr tRNA
747680 747753 + 74 49183039 tRNA-Trp-1 - 20 Trp tRNA
747761 747840 + 80 49183039 tRNA-Ile-3 - 14 Ile tRNA
747846 747923 + 78 49183039 tRNA-Asn-2 - 07 Asn tRNA
747922 747996 + 75 49183039 tRNA-Glu-3 - 04 Glu tRNA
1232543 1232618 - 76 49183039 tRNA-Val-1 - 13 Val tRNA
4095081 4095157 - 77 49183039 tRNA-Met-8 - 16 Met tRNA
4287997 4288076 - 80 49183039 tRNA-Arg-5 - 11 Arg tRNA
4288075 4288151 - 77 49183039 tRNA-Gly-2 - 01 Gly tRNA
4651159 4651233 - 75 49183039 tRNA-Glu-6 - 04 Glu tRNA
4651237 4651330 - 94 49183039 tRNA-Ser-4 - 08 Ser tRNA
4651335 4651412 - 78 49183039 tRNA-Asn-3 - 07 Asn tRNA
4651417 4651496 - 80 49183039 tRNA-Ile-1 - 14 Ile tRNA
4651504 4651577 - 74 49183039 tRNA-Gly-7 - 01 Gly tRNA
4651588 4651666 - 79 49183039 tRNA-Lys-3 - 10 Lys tRNA
4651674 4651752 - 79 49183039 tRNA-Thr-3 - 12 Thr tRNA
4651764 4651842 - 79 49183039 tRNA-Phe-1 - 17 Phe tRNA
4651852 4651930 - 79 49183039 tRNA-Asp-1 - 06 Asp tRNA
4651929 4652008 - 80 49183039 tRNA-Met-4 - 16 Met tRNA
4652033 4652128 - 96 49183039 tRNA-Ser-3 - 08 Ser tRNA
4652143 4652222 - 80 49183039 tRNA-Met-1 - 16 Met tRNA
4652224 4652303 - 80 49183039 tRNA-Met-5 - 16 Met tRNA
4652321 4652396 - 76 49183039 tRNA-Ala-5 - 02 Ala tRNA
4652409 4652485 - 77 49183039 tRNA-Pro-3 - 03 Pro tRNA
4652493 4652569 - 77 49183039 tRNA-Arg-1 - 11 Arg tRNA
4652570 4652661 - 92 49183039 tRNA-Leu-2 - 15 Leu tRNA
4652675 4652752 - 78 49183039 tRNA-Gly-4 - 01 Gly tRNA
4652779 4652862 - 84 49183039 tRNA-Leu-6 - 15 Leu tRNA
4652882 4652960 - 79 49183039 tRNA-His-1 - 09 His tRNA
4652967 4653045 - 79 49183039 tRNA-Thr-2 - 12 Thr tRNA
4653047 4653125 - 79 49183039 tRNA-Val-2 - 13 Val tRNA
4653133 4653241 - 109 49183039 rRNA-5s-11 - 5S ribosomal RNA
4653344 4656254 - 2911 49183039 rRNA-23s-11 - 23S ribosomal RNA
4656430 4657939 - 1510 49183039 rRNA-16s-11 - 16S ribosomal RNA
4868696 4868777 - 82 49183039 tRNA-Arg-4 - 11 Arg tRNA
5208043 5208118 - 76 49183039 tRNA-Phe-2 - 17 Phe tRNA
5208157 5208235 - 79 49183039 tRNA-Asp-2 - 06 Asp tRNA
5208253 5208327 - 75 49183039 tRNA-Glu-1 - 04 Glu tRNA
5208338 5208416 - 79 49183039 tRNA-Lys-5 - 10 Lys tRNA
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