Virtual Laboratory Wiki
Advertisement
   LOCUS       NC_004578            6397126 bp    DNA     circular BCT 21-JUN-2007
   DEFINITION  Pseudomonas syringae pv. tomato str. DC3000, complete genome.
   ACCESSION   NC_004578
   VERSION     NC_004578.1  GI:28867243
   KEYWORDS    .
   SOURCE      Pseudomonas syringae pv. tomato str. DC3000
     ORGANISM  Pseudomonas syringae pv. tomato str. DC3000
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 6397126)
     AUTHORS   Buell,C.R., Joardar,V., Lindeberg,M., Selengut,J., Paulsen,I.T.,
               Gwinn,M.L., Dodson,R.J., Deboy,R.T., Durkin,A.S., Kolonay,J.F.,
               Madupu,R., Daugherty,S., Brinkac,L., Beanan,M.J., Haft,D.H.,
               Nelson,W.C., Davidsen,T., Zafar,N., Zhou,L., Liu,J., Yuan,Q.,
               Khouri,H., Fedorova,N., Tran,B., Russell,D., Berry,K.,
               Utterback,T., Van Aken,S.E., Feldblyum,T.V., D'Ascenzo,M.,
               Deng,W.L., Ramos,A.R., Alfano,J.R., Cartinhour,S., Chatterjee,A.K.,
               Delaney,T.P., Lazarowitz,S.G., Martin,G.B., Schneider,D.J.,
               Tang,X., Bender,C.L., White,O., Fraser,C.M. and Collmer,A.
     TITLE     The complete genome sequence of the Arabidopsis and tomato pathogen
               Pseudomonas syringae pv. tomato DC3000
     JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 100 (18), 10181-10186 (2003)
      PUBMED   12928499
   REFERENCE   2  (bases 1 to 6397126)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-MAR-2003) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6397126)
     AUTHORS   Buell,R., Joardar,V., Khouri,H., Fedorova,N., Tran,B., Russell,D.,
               Berry,K., Utterback,T., Van Aken,S., Feldblyum,T., Gwinn,M.,
               Dodson,R., DeBoy,R., Durkin,A., Kolonay,J., Madupu,R.,
               Daugherty,S., Brinkac,L., Beanan,M., Haft,D., Selengut,J.,
               Nelson,W., Davidsen,T., White,O., Fraser,C. and Collmer,A.
     TITLE     Direct Submission
     JOURNAL   Submitted (03-MAR-2003) The Institute for Genomic Research, 9712
               Medical Center Dr, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AE016853.
               COMPLETENESS: full length.


Расположение РНК[]

Начало Конец Направление Длина PID Ген COG Комментарий
323982 324058 - 77 28867243 PSPTO_t01 - 11 Arg tRNA
586008 586084 - 77 28867243 PSPTO_t02 - 16 Met tRNA
666727 668265 + 1539 28867243 PSPTO_r01 - 16S ribosomal RNA
668362 668438 + 77 28867243 PSPTO_t03 - 14 Ile tRNA
668483 668558 + 76 28867243 PSPTO_t04 - 02 Ala tRNA
668802 671704 + 2903 28867243 PSPTO_r02 - 23S ribosomal RNA
671852 671971 + 120 28867243 PSPTO_r03 - 5S ribosomal RNA
674391 674475 + 85 28867243 PSPTO_t05 - 18 Tyr tRNA
674500 674573 + 74 28867243 PSPTO_t06 - 01 Gly tRNA
674600 674675 + 76 28867243 PSPTO_t07 - 12 Thr tRNA
674841 674916 + 76 28867243 PSPTO_t08 - 20 Trp tRNA
827541 829079 + 1539 28867243 PSPTO_r04 - 16S ribosomal RNA
829176 829252 + 77 28867243 PSPTO_t09 - 14 Ile tRNA
829297 829372 + 76 28867243 PSPTO_t10 - 02 Ala tRNA
829616 832518 + 2903 28867243 PSPTO_r05 - 23S ribosomal RNA
832666 832785 + 120 28867243 PSPTO_r06 - 5S ribosomal RNA
898785 898860 + 76 28867243 PSPTO_t11 - 07 Asn tRNA
898890 898966 + 77 28867243 PSPTO_t12 - 03 Pro tRNA
898972 899047 + 76 28867243 PSPTO_t13 - 10 Lys tRNA
899143 899219 + 77 28867243 PSPTO_t14 - 03 Pro tRNA
1072078 1073616 + 1539 28867243 PSPTO_r07 - 16S ribosomal RNA
1073713 1073789 + 77 28867243 PSPTO_t15 - 14 Ile tRNA
1073834 1073909 + 76 28867243 PSPTO_t16 - 02 Ala tRNA
1074153 1077055 + 2903 28867243 PSPTO_r08 - 23S ribosomal RNA
1077203 1077322 + 120 28867243 PSPTO_r09 - 5S ribosomal RNA
1162588 1162664 - 77 28867243 PSPTO_t17 - 16 Met tRNA
1219496 1219570 - 75 28867243 PSPTO_t18 - 05 Gln tRNA
1551777 1551861 - 85 28867243 PSPTO_t19 - 15 Leu tRNA
1956097 1956172 + 76 28867243 PSPTO_t20 - 04 Glu tRNA
1956175 1956250 + 76 28867243 PSPTO_t21 - 01 Gly tRNA
1956350 1956425 + 76 28867243 PSPTO_t22 - 04 Glu tRNA
1956430 1956505 + 76 28867243 PSPTO_t23 - 01 Gly tRNA
2014810 2014900 + 91 28867243 PSPTO_t24 - 08 Ser tRNA
2015010 2015086 + 77 28867243 PSPTO_t25 - 11 Arg tRNA
2015174 2015250 + 77 28867243 PSPTO_t26 - 11 Arg tRNA
2019304 2019380 + 77 28867243 PSPTO_t27 - 11 Arg tRNA
2266664 2266753 - 90 28867243 PSPTO_t28 - 08 Ser tRNA
2384751 2384826 + 76 28867243 PSPTO_t29 - 02 Ala tRNA
2384916 2384991 + 76 28867243 PSPTO_t30 - 04 Glu tRNA
2385044 2385119 + 76 28867243 PSPTO_t31 - 02 Ala tRNA
2385164 2385239 + 76 28867243 PSPTO_t32 - 04 Glu tRNA
2634736 2634812 + 77 28867243 PSPTO_t33 - 03 Pro tRNA
2988034 2988110 + 77 28867243 PSPTO_t34 - 13 Val tRNA
2988276 2988352 + 77 28867243 PSPTO_t35 - 13 Val tRNA
3346191 3346276 + 86 28867243 PSPTO_t36 - 15 Leu tRNA
3351545 3351618 - 74 28867243 PSPTO_t37 - 19 Cys tRNA
3397753 3397828 - 76 28867243 PSPTO_t38 - 01 Gly tRNA
3657062 3657137 - 76 28867243 PSPTO_t39 - 07 Asn tRNA
3771634 3771721 + 88 28867243 PSPTO_t40 - 08 Ser tRNA
3869438 3869557 - 120 28867243 PSPTO_r10 - 5S ribosomal RNA
3869705 3872607 - 2903 28867243 PSPTO_r11 - 23S ribosomal RNA
3872851 3872926 - 76 28867243 PSPTO_t41 - 02 Ala tRNA
3872971 3873047 - 77 28867243 PSPTO_t42 - 14 Ile tRNA
3873144 3874682 - 1539 28867243 PSPTO_r12 - 16S ribosomal RNA
4216266 4216350 - 85 28867243 PSPTO_t43 - 15 Leu tRNA
4216407 4216482 - 76 28867243 PSPTO_t44 - 09 His tRNA
4216534 4216610 - 77 28867243 PSPTO_t45 - 11 Arg tRNA
4316299 4316375 - 77 28867243 PSPTO_t46 - 06 Asp tRNA
4316490 4316566 - 77 28867243 PSPTO_t47 - 06 Asp tRNA
4316635 4316710 - 76 28867243 PSPTO_t48 - 13 Val tRNA
4408094 4408170 - 77 28867243 PSPTO_t49 - 06 Asp tRNA
4408191 4408266 - 76 28867243 PSPTO_t50 - 13 Val tRNA
4458619 4458708 - 90 28867243 PSPTO_t51 - 08 Ser tRNA
4476434 4476509 - 76 28867243 PSPTO_t52 - 10 Lys tRNA
4498448 4498524 + 77 28867243 PSPTO_t53 - 16 Met tRNA
4498716 4498792 + 77 28867243 PSPTO_t54 - 16 Met tRNA
4787411 4787484 + 74 28867243 PSPTO_t55 - 01 Gly tRNA
5061291 5061367 - 77 28867243 PSPTO_t56 - 16 Met tRNA
5061463 5061548 - 86 28867243 PSPTO_t57 - 15 Leu tRNA
5592964 5593050 + 87 28867243 PSPTO_t58 - 15 Leu tRNA
5593211 5593297 + 87 28867243 PSPTO_t59 - 15 Leu tRNA
6074544 6074619 + 76 28867243 PSPTO_t60 - 17 Phe tRNA
6097142 6097217 + 76 28867243 PSPTO_t61 - 12 Thr tRNA
6213679 6213806 - 128 28867243 PSPTO_r16 - 5S ribosomal RNA
6213909 6214028 - 120 28867243 PSPTO_r13 - 5S ribosomal RNA
6214176 6217078 - 2903 28867243 PSPTO_r14 - 23S ribosomal RNA
6217322 6217397 - 76 28867243 PSPTO_t62 - 02 Ala tRNA
6217442 6217518 - 77 28867243 PSPTO_t63 - 14 Ile tRNA
6217615 6219153 - 1539 28867243 PSPTO_r15 - 16S ribosomal RNA
Advertisement